PDB entry 3od5

View 3od5 on RCSB PDB site
Description: Crystal structure of active caspase-6 bound with Ac-VEID-CHO
Class: hydrolase/hydrolase inhibitor
Keywords: Caspase domain, Apoptotic protease, HYDROLASE-HYDROLASE INHIBITOR complex
Deposited on 2010-08-11, released 2010-10-27
The last revision prior to the SCOPe 2.02 freeze date was dated 2010-11-24, with a file datestamp of 2010-11-19.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.157
AEROSPACI score: 0.62 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Caspase-6
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3od5a_
  • Chain 'B':
    Compound: Caspase-6
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3od5b_
  • Chain 'C':
    Compound: peptide aldehyde inhibitor AC-VEID-CHO
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 3OD5 (Start-3)
  • Chain 'D':
    Compound: peptide aldehyde inhibitor AC-VEID-CHO
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 3OD5 (Start-3)
  • Heterogens: CAC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3od5A (A:)
afykremfdpaekykmdhrrrgialifnherffwhltlperrgtcadrdnltrrfsdlgf
evkcfndlkaeelllkihevstvshadadcfvcvflshgegnhiyaydakieiqtltglf
kgdkchslvgkpkifiiqacrgnqhdvpvipldvvdnqtekldtnitevdaasvytlpag
adflmcysvaegyyshretvngswyiqdlcemlgkygssleftelltlvnrkvsqrrvdf
ckdpsaigkkqvpcfasmltkklhffpksnlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3od5A (A:)
fdpaekykmdhrrrgialifnherffwhltlperrgtcadrdnltrrfsdlgfevkcfnd
lkaeelllkihevstvshadadcfvcvflshgegnhiyaydakieiqtltglfkgdkchs
lvgkpkifiiqacrgnqhdvpviplvytlpagadflmcysvaegyyshretvngswyiqd
lcemlgkygssleftelltlvnrkvsqrrvdfckdpsaigkkqvpcfasmltkklhffpk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3od5B (B:)
afykremfdpaekykmdhrrrgialifnherffwhltlperrgtcadrdnltrrfsdlgf
evkcfndlkaeelllkihevstvshadadcfvcvflshgegnhiyaydakieiqtltglf
kgdkchslvgkpkifiiqacrgnqhdvpvipldvvdnqtekldtnitevdaasvytlpag
adflmcysvaegyyshretvngswyiqdlcemlgkygssleftelltlvnrkvsqrrvdf
ckdpsaigkkqvpcfasmltkklhffpksnlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3od5B (B:)
fdpaekykmdhrrrgialifnherffwhltlperrgtcadrdnltrrfsdlgfevkcfnd
lkaeelllkihevstvshadadcfvcvflshgegnhiyaydakieiqtltglfkgdkchs
lvgkpkifiiqacrgnqhdvpviplvytlpagadflmcysvaegyyshretvngswyiqd
lcemlgkygssleftelltlvnrkvsqrrvdfckdpsaigkkqvpcfasmltkklhffpk

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.