PDB entry 3nmy

View 3nmy on RCSB PDB site
Description: Native structure of XoMetC at pH 9.0
Class: lyase
Keywords: XometC, Cys-Met Metabolism PLP-Dependent Enzyme family, Cystathionine gamma lyase, Pyridoxal-phosphate, LYASE
Deposited on 2010-06-23, released 2011-06-29
The last revision prior to the SCOPe 2.06 freeze date was dated 2014-01-29, with a file datestamp of 2014-01-24.
Experiment type: XRAY
Resolution: 2.07 Å
R-factor: 0.185
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cystathionine gamma-lyase-like protein
    Species: Xanthomonas oryzae pv. oryzae [TaxId:291331]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3nmya_
  • Chain 'B':
    Compound: Cystathionine gamma-lyase-like protein
    Species: Xanthomonas oryzae pv. oryzae [TaxId:291331]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3nmyb_
  • Chain 'C':
    Compound: Cystathionine gamma-lyase-like protein
    Species: Xanthomonas oryzae pv. oryzae [TaxId:291331]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3nmyc_
  • Chain 'D':
    Compound: Cystathionine gamma-lyase-like protein
    Species: Xanthomonas oryzae pv. oryzae [TaxId:291331]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3nmyd_
  • Heterogens: PLP, BCT, BME, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3nmyA (A:)
gshmsnrtthshdgdralslatlaihggqspdpstgavmppiyatstyaqsspgehqgfe
ysrthnptrfayercvaaleggtrafafasgmaatstvmelldagshvvamddlyggtfr
lfervrrrtagldfsfvdltdpaafkaairadtkmvwietptnpmlklvdiaaiaviark
hglltvvdntfaspmlqrplslgadlvvhsatkylnghsdmvggiavvgdnaelaeqmaf
lqnsiggvqgpfdsflalrglktlplrmrahcenalalaqwlethpaiekviypglashp
qhvlakrqmsgfggivsivlkggfdaakrfcektelftlaeslggveslvnhpavmthas
ipvarreqlgisdalvrlsvgiedlgdlrgdleralvnqn

    Sequence, based on observed residues (ATOM records): (download) 
    >3nmyA (A:)
alslatlaihggqspdpstgavmppiyatstyaqsspgehqgfeysrthnptrfayercv
aaleggtrafafasgmaatstvmelldagshvvamddlyggtfrlfervrrrtagldfsf
vdltdpaafkaairadtkmvwietptnpmlklvdiaaiaviarkhglltvvdntfaspml
qrplslgadlvvhsatkylnghsdmvggiavvgdnaelaeqmaflqnsiggvqgpfdsfl
alrglktlplrmrahcenalalaqwlethpaiekviypglashpqhvlakrqmsgfggiv
sivlkggfdaakrfcektelftlaeslggveslvnhpavmthasipvarreqlgisdalv
rlsvgiedlgdlrgdleralv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3nmyB (B:)
gshmsnrtthshdgdralslatlaihggqspdpstgavmppiyatstyaqsspgehqgfe
ysrthnptrfayercvaaleggtrafafasgmaatstvmelldagshvvamddlyggtfr
lfervrrrtagldfsfvdltdpaafkaairadtkmvwietptnpmlklvdiaaiaviark
hglltvvdntfaspmlqrplslgadlvvhsatkylnghsdmvggiavvgdnaelaeqmaf
lqnsiggvqgpfdsflalrglktlplrmrahcenalalaqwlethpaiekviypglashp
qhvlakrqmsgfggivsivlkggfdaakrfcektelftlaeslggveslvnhpavmthas
ipvarreqlgisdalvrlsvgiedlgdlrgdleralvnqn

    Sequence, based on observed residues (ATOM records): (download) 
    >3nmyB (B:)
alslatlaihggqspdpstgavmppiyatstyaqsspgehqgfeysrthnptrfayercv
aaleggtrafafasgmaatstvmelldagshvvamddlyggtfrlfervrrrtagldfsf
vdltdpaafkaairadtkmvwietptnpmlklvdiaaiaviarkhglltvvdntfaspml
qrplslgadlvvhsatkylnghsdmvggiavvgdnaelaeqmaflqnsiggvqgpfdsfl
alrglktlplrmrahcenalalaqwlethpaiekviypglashpqhvlakrqmsgfggiv
sivlkggfdaakrfcektelftlaeslggveslvnhpavmthasipvarreqlgisdalv
rlsvgiedlgdlrgdleralv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3nmyC (C:)
gshmsnrtthshdgdralslatlaihggqspdpstgavmppiyatstyaqsspgehqgfe
ysrthnptrfayercvaaleggtrafafasgmaatstvmelldagshvvamddlyggtfr
lfervrrrtagldfsfvdltdpaafkaairadtkmvwietptnpmlklvdiaaiaviark
hglltvvdntfaspmlqrplslgadlvvhsatkylnghsdmvggiavvgdnaelaeqmaf
lqnsiggvqgpfdsflalrglktlplrmrahcenalalaqwlethpaiekviypglashp
qhvlakrqmsgfggivsivlkggfdaakrfcektelftlaeslggveslvnhpavmthas
ipvarreqlgisdalvrlsvgiedlgdlrgdleralvnqn

    Sequence, based on observed residues (ATOM records): (download) 
    >3nmyC (C:)
alslatlaihggqspdpstgavmppiyatstyaqsspgehqgfeysrthnptrfayercv
aaleggtrafafasgmaatstvmelldagshvvamddlyggtfrlfervrrrtagldfsf
vdltdpaafkaairadtkmvwietptnpmlklvdiaaiaviarkhglltvvdntfaspml
qrplslgadlvvhsatkylnghsdmvggiavvgdnaelaeqmaflqnsiggvqgpfdsfl
alrglktlplrmrahcenalalaqwlethpaiekviypglashpqhvlakrqmsgfggiv
sivlkggfdaakrfcektelftlaeslggveslvnhpavmthpvarreqlgisdalvrls
vgiedlgdlrgdleralv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3nmyD (D:)
gshmsnrtthshdgdralslatlaihggqspdpstgavmppiyatstyaqsspgehqgfe
ysrthnptrfayercvaaleggtrafafasgmaatstvmelldagshvvamddlyggtfr
lfervrrrtagldfsfvdltdpaafkaairadtkmvwietptnpmlklvdiaaiaviark
hglltvvdntfaspmlqrplslgadlvvhsatkylnghsdmvggiavvgdnaelaeqmaf
lqnsiggvqgpfdsflalrglktlplrmrahcenalalaqwlethpaiekviypglashp
qhvlakrqmsgfggivsivlkggfdaakrfcektelftlaeslggveslvnhpavmthas
ipvarreqlgisdalvrlsvgiedlgdlrgdleralvnqn

    Sequence, based on observed residues (ATOM records): (download) 
    >3nmyD (D:)
alslatlaihggqspdpstgavmppiyatstyaqsspgehqgfeysrthnptrfayercv
aaleggtrafafasgmaatstvmelldagshvvamddlyggtfrlfervrrrtagldfsf
vdltdpaafkaairadtkmvwietptnpmlklvdiaaiaviarkhglltvvdntfaspml
qrplslgadlvvhsatkylnghsdmvggiavvgdnaelaeqmaflqnsiggvqgpfdsfl
alrglktlplrmrahcenalalaqwlethpaiekviypglashpqhvlakrqmsgfggiv
sivlkggfdaakrfcektelftlaeslggveslvnhpavmthapvarreqlgisdalvrl
svgiedlgdlrgdleral