PDB entry 3ng3

View 3ng3 on RCSB PDB site
Description: Crystal structure of deoxyribose phosphate aldolase from mycobacterium avium 104 in a schiff base with an unknown aldehyde
Class: lyase
Keywords: SSGCID, SBRI, UW, ALS DEOXYRIBOSEPHOSPHATE ALDOLASE, MYCOBACTERIUM AVIUM 104, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, LYASE
Deposited on 2010-06-10, released 2010-06-23
The last revision prior to the SCOPe 2.03 freeze date was dated 2010-06-23, with a file datestamp of 2010-06-18.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.188
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: deoxyribose-phosphate aldolase
    Species: Mycobacterium avium [TaxId:243243]
    Gene: deoC, GeneID 4528214 Gene locus MAV_4672, MAV_4672
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3ng3a_
  • Chain 'B':
    Compound: deoxyribose-phosphate aldolase
    Species: Mycobacterium avium [TaxId:243243]
    Gene: deoC, GeneID 4528214 Gene locus MAV_4672, MAV_4672
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3ng3b_
  • Chain 'C':
    Compound: deoxyribose-phosphate aldolase
    Species: Mycobacterium avium [TaxId:243243]
    Gene: deoC, GeneID 4528214 Gene locus MAV_4672, MAV_4672
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3ng3c_
  • Chain 'D':
    Compound: deoxyribose-phosphate aldolase
    Species: Mycobacterium avium [TaxId:243243]
    Gene: deoC, GeneID 4528214 Gene locus MAV_4672, MAV_4672
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3ng3d_
  • Heterogens: CL, UNL, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ng3A (A:)
gpgsmtptraqlaafvdhtllkpeataadvaalvteaaelgvyavcvsppmvpaavqaga
gvrvasvagfpsgkhvsavkaheaalavasgaaeidmvidvgaalagdldgvradiaavr
gavggavlkvivessallaladehtlvrvcraaedagadfvktstgfhpsggasvraval
maeavggrlgvkasggirtaadalamldagatrlglsgtravldglg

    Sequence, based on observed residues (ATOM records): (download) 
    >3ng3A (A:)
tptraqlaafvdhtllkpeataadvaalvteaaelgvyavcvsppmvpaavqagarvasv
agfpsgkhvsavkaheaalavasgaaeidmvidvgaalagdldgvradiaavrgavggav
lkvivessallaladehtlvrvcraaedagadfvktstgfhpsggasvravalmaeavgg
rlgvkasggirtaadalamldagatrlglsgtravldgl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3ng3B (B:)
gpgsmtptraqlaafvdhtllkpeataadvaalvteaaelgvyavcvsppmvpaavqaga
gvrvasvagfpsgkhvsavkaheaalavasgaaeidmvidvgaalagdldgvradiaavr
gavggavlkvivessallaladehtlvrvcraaedagadfvktstgfhpsggasvraval
maeavggrlgvkasggirtaadalamldagatrlglsgtravldglg

    Sequence, based on observed residues (ATOM records): (download) 
    >3ng3B (B:)
ptraqlaafvdhtllkpeataadvaalvteaaelgvyavcvsppmvpaavqarvasvagf
psgkhvsavkaheaalavasgaaeidmvidvgaalagdldgvradiaavrgavggavlkv
ivessallaladehtlvrvcraaedagadfvktstgfhpsggasvravalmaeavggrlg
vkasggirtaadalamldagatrlglsgtravldgl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3ng3C (C:)
gpgsmtptraqlaafvdhtllkpeataadvaalvteaaelgvyavcvsppmvpaavqaga
gvrvasvagfpsgkhvsavkaheaalavasgaaeidmvidvgaalagdldgvradiaavr
gavggavlkvivessallaladehtlvrvcraaedagadfvktstgfhpsggasvraval
maeavggrlgvkasggirtaadalamldagatrlglsgtravldglg

    Sequence, based on observed residues (ATOM records): (download) 
    >3ng3C (C:)
ptraqlaafvdhtllkpeataadvaalvteaaelgvyavcvsppmvpaavqagagvrvas
vagfpsgkhvsavkaheaalavasgaaeidmvidvgaalagdldgvradiaavrgavgga
vlkvivessallaladehtlvrvcraaedagadfvktstgfhpsggasvravalmaeavg
grlgvkasggirtaadalamldagatrlglsgtravldgl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3ng3D (D:)
gpgsmtptraqlaafvdhtllkpeataadvaalvteaaelgvyavcvsppmvpaavqaga
gvrvasvagfpsgkhvsavkaheaalavasgaaeidmvidvgaalagdldgvradiaavr
gavggavlkvivessallaladehtlvrvcraaedagadfvktstgfhpsggasvraval
maeavggrlgvkasggirtaadalamldagatrlglsgtravldglg

    Sequence, based on observed residues (ATOM records): (download) 
    >3ng3D (D:)
tptraqlaafvdhtllkpeataadvaalvteaaelgvyavcvsppmvpaavqagvrvasv
agfpsgkhvsavkaheaalavasgaaeidmvidvgaalagdldgvradiaavrgavggav
lkvivessallaladehtlvrvcraaedagadfvktstgfhpsggasvravalmaeavgg
rlgvkasggirtaadalamldagatrlglsgtravldg