PDB entry 3m5r

View 3m5r on RCSB PDB site
Description: Crystal Structure of Swine Flu Virus NS1 Effector Domain from H1N1 Influenza A/California/07/2009
Class: viral protein
Keywords: Viral protein, Swine Flu Virus, Influenza A H1N1 Subtype, Nonstructural Protein 1, Effector domain, Viral immune evasion, Structural Genomics, NIAID, Center for Structural Genomics of Infectious Diseases, CSGID
Deposited on 2010-03-13, released 2010-04-07
The last revision prior to the SCOPe 2.02 freeze date was dated 2010-04-07, with a file datestamp of 2010-04-02.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.208
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: nonstructural protein 1
    Species: Influenza A virus [TaxId:641809]
    Gene: NS1
    Database cross-references and differences (RAF-indexed):
    • Uniprot D2Y6Z6 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.02: d3m5ra_
  • Chain 'B':
    Compound: nonstructural protein 1
    Species: Influenza A virus [TaxId:641809]
    Gene: NS1
    Database cross-references and differences (RAF-indexed):
    • Uniprot D2Y6Z6 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.02: d3m5rb_
  • Chain 'D':
    Compound: nonstructural protein 1
    Species: Influenza A virus [TaxId:641809]
    Gene: NS1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3m5rd_
  • Chain 'E':
    Compound: nonstructural protein 1
    Species: Influenza A virus [TaxId:641809]
    Gene: NS1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3m5re_
  • Chain 'F':
    Compound: nonstructural protein 1
    Species: Influenza A virus [TaxId:641809]
    Gene: NS1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3m5rf_
  • Chain 'G':
    Compound: nonstructural protein 1
    Species: Influenza A virus [TaxId:641809]
    Gene: NS1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3m5rg_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3m5rA (A:)
gshmtiasvptsrylsdmtleemsrdwfmlmprqkiigplcvrldqaimeknivlkanfs
vifnrletlillrafteegaivgeisplpslpghtyedvknavgvligglewngntvrvs
eniqrfawrncde

    Sequence, based on observed residues (ATOM records): (download) 
    >3m5rA (A:)
hmtiasvptsrylsdmtleemsrdwfmlmprqkiigplcvrldqaimeknivlkanfsvi
fnrletlillrafteegaivgeisplpslpghtyedvknavgvligglewngntvrvsen
iqrfaw

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3m5rB (B:)
gshmtiasvptsrylsdmtleemsrdwfmlmprqkiigplcvrldqaimeknivlkanfs
vifnrletlillrafteegaivgeisplpslpghtyedvknavgvligglewngntvrvs
eniqrfawrncde

    Sequence, based on observed residues (ATOM records): (download) 
    >3m5rB (B:)
hmtiasvptsrylsdmtleemsrdwfmlmprqkiigplcvrldqaimeknivlkanfsvi
fnrletlillrafteegaivgeisplpslpghtyedvknavgvligglewngntvrvsen
iqrfaw

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3m5rD (D:)
gshmtiasvptsrylsdmtleemsrdwfmlmprqkiigplcvrldqaimeknivlkanfs
vifnrletlillrafteegaivgeisplpslpghtyedvknavgvligglewngntvrvs
eniqrfawrncde

    Sequence, based on observed residues (ATOM records): (download) 
    >3m5rD (D:)
svptsrylsdmtleemsrdwfmlmprqkiigplcvrldqaimeknivlkanfsvifnrle
tlillrafteegaivgeisplpslpghtyedvknavgvligglewngntvrvseniqrfa
w

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3m5rE (E:)
gshmtiasvptsrylsdmtleemsrdwfmlmprqkiigplcvrldqaimeknivlkanfs
vifnrletlillrafteegaivgeisplpslpghtyedvknavgvligglewngntvrvs
eniqrfawrncde

    Sequence, based on observed residues (ATOM records): (download) 
    >3m5rE (E:)
svptsrylsdmtleemsrdwfmlmprqkiigplcvrldqaimeknivlkanfsvifnrle
tlillrafteegaivgeisplpslpghtyedvknavgvligglewngntvrvseniqrfa
w

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3m5rF (F:)
gshmtiasvptsrylsdmtleemsrdwfmlmprqkiigplcvrldqaimeknivlkanfs
vifnrletlillrafteegaivgeisplpslpghtyedvknavgvligglewngntvrvs
eniqrfawrncde

    Sequence, based on observed residues (ATOM records): (download) 
    >3m5rF (F:)
svptsrylsdmtleemsrdwfmlmprqkiigplcvrldqaimeknivlkanfsvifnrle
tlillrafteegaivgeisplpslpghtyedvknavgvligglewngntvrvseniqrfa
w

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3m5rG (G:)
gshmtiasvptsrylsdmtleemsrdwfmlmprqkiigplcvrldqaimeknivlkanfs
vifnrletlillrafteegaivgeisplpslpghtyedvknavgvligglewngntvrvs
eniqrfawrncde

    Sequence, based on observed residues (ATOM records): (download) 
    >3m5rG (G:)
svptsrylsdmtleemsrdwfmlmprqkiigplcvrldqaimeknivlkanfsvifnrle
tlillrafteegaivgeisplpslpghtyedvknavgvligglewngntvrvseniqrfa
w