PDB entry 3l3v

View 3l3v on RCSB PDB site
Description: Structure of HIV-1 integrase core domain in complex with sucrose
Class: viral protein
Keywords: DNA integration, aids, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein
Deposited on 2009-12-18, released 2010-03-31
The last revision prior to the SCOPe 2.07 freeze date was dated 2014-02-12, with a file datestamp of 2014-02-07.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.196
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pol polyprotein
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: pol
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72498
      • engineered (6)
      • engineered (81)
      • engineered (89)
      • engineered (135)
    Domains in SCOPe 2.07: d3l3va_
  • Chain 'B':
    Compound: Pol polyprotein
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: pol
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72498
      • engineered (81)
      • engineered (135)
    Domains in SCOPe 2.07: d3l3vb_
  • Heterogens: CD, SO4, SUC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3l3vA (A:)
mhgqvdsspgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwp
vktvhtdngsnftsttvkaacdwagikqedgipynpqsqgviesmnkelkkiigqvrdqa
ehlktavqmavfihnhkrkggiggysagerivdiiatdiqtke

    Sequence, based on observed residues (ATOM records): (download) 
    >3l3vA (A:)
sspgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvht
dngsnftsttvkaacdwagikqedgipesmnkelkkiigqvrdqaehlktavqmavfihn
hkrkggiggysagerivdiiatdi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3l3vB (B:)
mhgqvdsspgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwp
vktvhtdngsnftsttvkaacdwagikqedgipynpqsqgviesmnkelkkiigqvrdqa
ehlktavqmavfihnhkrkggiggysagerivdiiatdiqtke

    Sequence, based on observed residues (ATOM records): (download) 
    >3l3vB (B:)
spgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvhtd
ngsnftsttvkaacdwagikqeesmnkelkkiigqvrdqaehlktavqmavfihnhkrkg
giggysagerivdiiatdiq