PDB entry 3kyg

View 3kyg on RCSB PDB site
Description: Crystal structure of VCA0042 (L135R) complexed with c-di-GMP
Class: unknown function
Keywords: c-di-GMP, PilZ domain, PP4397, VCA0042, UNKNOWN FUNCTION
Deposited on 2009-12-06, released 2010-04-14
The last revision prior to the SCOPe 2.05 freeze date was dated 2010-04-14, with a file datestamp of 2010-04-09.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.201
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative uncharacterized protein VCA0042
    Species: Vibrio cholerae [TaxId:666]
    Gene: VC_A0042
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KNC3 (0-226)
      • engineered (114)
    Domains in SCOPe 2.05: d3kyga1, d3kyga2
  • Chain 'B':
    Compound: Putative uncharacterized protein VCA0042
    Species: Vibrio cholerae [TaxId:666]
    Gene: VC_A0042
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KNC3 (0-226)
      • engineered (114)
    Domains in SCOPe 2.05: d3kygb1, d3kygb2
  • Heterogens: 5GP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3kygA (A:)
sktvstinstdalamvehsseltlsittpvgtkfvcrtpfigthtdkfllvempkisadd
lqyffqegfwmniraisprgegalihfrsqlmhilqepvpmaflsipntmqvsqrrkepr
felnlagkvlfdehrgdcelrdlsrsgcrfitpplgktyqvgdlvaleifsdlrgtktfp
pltgkicnlqrslhharyglefneegrnnaknllaqlkfngtkltln

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3kygB (B:)
sktvstinstdalamvehsseltlsittpvgtkfvcrtpfigthtdkfllvempkisadd
lqyffqegfwmniraisprgegalihfrsqlmhilqepvpmaflsipntmqvsqrrkepr
felnlagkvlfdehrgdcelrdlsrsgcrfitpplgktyqvgdlvaleifsdlrgtktfp
pltgkicnlqrslhharyglefneegrnnaknllaqlkfngtkltln