PDB entry 3kth

View 3kth on RCSB PDB site
Description: Structure of ClpP from Bacillus subtilis in orthorombic crystal form
Class: hydrolase
Keywords: hydrolase, ATP-binding, Nucleotide-binding, Protease, Serine protease, Stress response
Deposited on 2009-11-25, released 2010-03-23
The last revision prior to the SCOPe 2.04 freeze date was dated 2010-11-03, with a file datestamp of 2010-10-29.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.248
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Bacillus subtilis [TaxId:1423]
    Gene: clpP, yvdN, BSU34540
    Database cross-references and differences (RAF-indexed):
    • Uniprot P80244
      • engineered (191)
    Domains in SCOPe 2.04: d3ktha_
  • Chain 'B':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Bacillus subtilis [TaxId:1423]
    Gene: clpP, yvdN, BSU34540
    Database cross-references and differences (RAF-indexed):
    • Uniprot P80244
      • engineered (191)
    Domains in SCOPe 2.04: d3kthb_
  • Chain 'C':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Bacillus subtilis [TaxId:1423]
    Gene: clpP, yvdN, BSU34540
    Database cross-references and differences (RAF-indexed):
    • Uniprot P80244
      • engineered (191)
    Domains in SCOPe 2.04: d3kthc_
  • Chain 'D':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Bacillus subtilis [TaxId:1423]
    Gene: clpP, yvdN, BSU34540
    Database cross-references and differences (RAF-indexed):
    • Uniprot P80244
      • engineered (191)
    Domains in SCOPe 2.04: d3kthd_
  • Chain 'E':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Bacillus subtilis [TaxId:1423]
    Gene: clpP, yvdN, BSU34540
    Database cross-references and differences (RAF-indexed):
    • Uniprot P80244
      • engineered (191)
    Domains in SCOPe 2.04: d3kthe_
  • Chain 'F':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Bacillus subtilis [TaxId:1423]
    Gene: clpP, yvdN, BSU34540
    Database cross-references and differences (RAF-indexed):
    • Uniprot P80244
      • engineered (191)
    Domains in SCOPe 2.04: d3kthf_
  • Chain 'G':
    Compound: ATP-dependent Clp protease proteolytic subunit
    Species: Bacillus subtilis [TaxId:1423]
    Gene: clpP, yvdN, BSU34540
    Database cross-references and differences (RAF-indexed):
    • Uniprot P80244
      • engineered (191)
    Domains in SCOPe 2.04: d3kthg_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3kthA (A:)
nliptvieqtnrgeraydiysrllkdriimlgsaiddnvansivsqllflaaedpekeis
lyinspggsitagmaiydtmqfikpkvsticigmaasmgafllaagekgkryalpnsevm
ihqplggaqgqateieiaakrilllrdklnkvlaertgqplevierdtdrdnfksaeeal
eyglidkilthlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3kthA (A:)
iptvydiysrllkdriimlgsaiddnvansivsqllflaaedpekeislyinspggsita
gmaiydtmqfikpkvsticigmaasmgafllaagekgkryalpnsevmihqplggaqgqa
teieiaakrilllrdklnkvlaertgqplevierdtdrdnfksaeealeyglidkilthl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3kthB (B:)
nliptvieqtnrgeraydiysrllkdriimlgsaiddnvansivsqllflaaedpekeis
lyinspggsitagmaiydtmqfikpkvsticigmaasmgafllaagekgkryalpnsevm
ihqplggaqgqateieiaakrilllrdklnkvlaertgqplevierdtdrdnfksaeeal
eyglidkilthlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3kthB (B:)
iptviydiysrllkdriimlgsaiddnvansivsqllflaaedpekeislyinspggsit
agmaiydtmqfikpkvsticigmaasmgafllaagekgkryalpnsevmihqplggaqgq
ateieiaakrilllrdklnkvlaertgqplevierdtdrdnfksaeealeyglidkilth
le

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3kthC (C:)
nliptvieqtnrgeraydiysrllkdriimlgsaiddnvansivsqllflaaedpekeis
lyinspggsitagmaiydtmqfikpkvsticigmaasmgafllaagekgkryalpnsevm
ihqplggaqgqateieiaakrilllrdklnkvlaertgqplevierdtdrdnfksaeeal
eyglidkilthlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3kthC (C:)
iptvydiysrllkdriimlgsaiddnvansivsqllflaaedpekeislyinspggsita
gmaiydtmqfikpkvsticigmaasmgafllaagekgkryalpnsevmihqplggaqgqa
teieiaakrilllrdklnkvlaertgqplevierdtdrdnfksaeealeyglidkilthl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3kthD (D:)
nliptvieqtnrgeraydiysrllkdriimlgsaiddnvansivsqllflaaedpekeis
lyinspggsitagmaiydtmqfikpkvsticigmaasmgafllaagekgkryalpnsevm
ihqplggaqgqateieiaakrilllrdklnkvlaertgqplevierdtdrdnfksaeeal
eyglidkilthlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3kthD (D:)
iptvydiysrllkdriimlgsaiddnvansivsqllflaaedpekeislyinspggsita
gmaiydtmqfikpkvsticigmaasmgafllaagekgkryalpnsevmihqplggaqgqa
teieiaakrilllrdklnkvlaertgqplevierdtdrdnfksaeealeyglidkilthl
e

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3kthE (E:)
nliptvieqtnrgeraydiysrllkdriimlgsaiddnvansivsqllflaaedpekeis
lyinspggsitagmaiydtmqfikpkvsticigmaasmgafllaagekgkryalpnsevm
ihqplggaqgqateieiaakrilllrdklnkvlaertgqplevierdtdrdnfksaeeal
eyglidkilthlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3kthE (E:)
iptvydiysrllkdriimlgsaiddnvansivsqllflaaedpekeislyinspggsita
gmaiydtmqfikpkvsticigmaasmgafllaagekgkryalpnsevmihqplggaqgqa
teieiaakrilllrdklnkvlaertgqplevierdtdrdnfksaeealeyglidkilthl
e

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3kthF (F:)
nliptvieqtnrgeraydiysrllkdriimlgsaiddnvansivsqllflaaedpekeis
lyinspggsitagmaiydtmqfikpkvsticigmaasmgafllaagekgkryalpnsevm
ihqplggaqgqateieiaakrilllrdklnkvlaertgqplevierdtdrdnfksaeeal
eyglidkilthlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3kthF (F:)
iptviydiysrllkdriimlgsaiddnvansivsqllflaaedpekeislyinspggsit
agmaiydtmqfikpkvsticigmaasmgafllaagekgkryalpnsevmihqplggaqgq
ateieiaakrilllrdklnkvlaertgqplevierdtdrdnfksaeealeyglidkilth
le

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3kthG (G:)
nliptvieqtnrgeraydiysrllkdriimlgsaiddnvansivsqllflaaedpekeis
lyinspggsitagmaiydtmqfikpkvsticigmaasmgafllaagekgkryalpnsevm
ihqplggaqgqateieiaakrilllrdklnkvlaertgqplevierdtdrdnfksaeeal
eyglidkilthlehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3kthG (G:)
iptvydiysrllkdriimlgsaiddnvansivsqllflaaedpekeislyinspggsita
gmaiydtmqfikpkvsticigmaasmgafllaagekgkryalpnsevmihqplggaqgqa
teieiaakrilllrdklnkvlaertgqplevierdtdrdnfksaeealeyglidkilthl
e