PDB entry 3ks5

View 3ks5 on RCSB PDB site
Description: Crystal structure of Putative glycerophosphoryl diester phosphodiesterase (17743486) from AGROBACTERIUM TUMEFACIENS str. C58 (Dupont) at 2.05 A resolution
Class: hydrolase
Keywords: Putative glycerophosphoryl diester phosphodiesterase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, Plasmid, HYDROLASE
Deposited on 2009-11-20, released 2009-12-08
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-01, with a file datestamp of 2017-10-27.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glycerophosphoryl diester phosphodiesterase
    Species: Agrobacterium tumefaciens str. C58 [TaxId:176299]
    Gene: 17743486, AGR_pAT_81, Atu5061, glpQ
    Database cross-references and differences (RAF-indexed):
    • Uniprot A9CLR1 (1-End)
      • leader sequence (0)
    Domains in SCOPe 2.07: d3ks5a1, d3ks5a2
  • Chain 'B':
    Compound: Glycerophosphoryl diester phosphodiesterase
    Species: Agrobacterium tumefaciens str. C58 [TaxId:176299]
    Gene: 17743486, AGR_pAT_81, Atu5061, glpQ
    Database cross-references and differences (RAF-indexed):
    • Uniprot A9CLR1 (1-End)
      • leader sequence (0)
    Domains in SCOPe 2.07: d3ks5b1, d3ks5b2
  • Heterogens: FE, ACT, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ks5A (A:)
gmtriashrggtlefgdstphgftataamaleevefdlhptadgaivvhhdptldattdm
tgaivdmtlakvktatirygagshpmtleelcalyvdshvnfrceikpgvdglpyegfva
lviaglerhsmlerttfssfllasmdelwkattrprlwlvspsvlqqlgpgavietaiah
siheigvhidtadaglmaqvqaagldfgcwaahtpsqitkaldlgvkvfttdrptlaial
rtehrmeasv

    Sequence, based on observed residues (ATOM records): (download) 
    >3ks5A (A:)
gmtriashrggtlefgdstphgftataamaleevefdlhptadgaivvhhdptldattdm
tgaivdmtlakvktatirygagshpmtleelcalyvdshvnfrceikpgvdglpyegfva
lviaglerhsmlerttfssfllasmdelwkattrprlwlvspsvlqqlgpgavietaiah
siheigvhidtadaglmaqvqaagldfgcwaahtpsqitkaldlgvkvfttdrptlaial
rtehrme

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3ks5B (B:)
gmtriashrggtlefgdstphgftataamaleevefdlhptadgaivvhhdptldattdm
tgaivdmtlakvktatirygagshpmtleelcalyvdshvnfrceikpgvdglpyegfva
lviaglerhsmlerttfssfllasmdelwkattrprlwlvspsvlqqlgpgavietaiah
siheigvhidtadaglmaqvqaagldfgcwaahtpsqitkaldlgvkvfttdrptlaial
rtehrmeasv

    Sequence, based on observed residues (ATOM records): (download) 
    >3ks5B (B:)
gmtriashrggtlefgdstphgftataamaleevefdlhptadgaivvhhdptldattdm
tgaivdmtlakvktatirygagshpmtleelcalyvdshvnfrceikpgvdglpyegfva
lviaglerhsmlerttfssfllasmdelwkattrprlwlvspsvlqqlgpgavietaiah
siheigvhidtadaglmaqvqaagldfgcwaahtpsqitkaldlgvkvfttdrptlaial
rtehrmea