PDB entry 3kod

View 3kod on RCSB PDB site
Description: DTD from Plasmodium falciparum in complex with D-Serine
Class: hydrolase
Keywords: DTD, DEACYLASE, D-SERINE, D-AMINO ACID, Hydrolase
Deposited on 2009-11-13, released 2009-12-08
The last revision prior to the SCOPe 2.06 freeze date was dated 2010-03-02, with a file datestamp of 2010-02-26.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.203
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: D-tyrosyl-tRNA(Tyr) deacylase
    Species: PLASMODIUM FALCIPARUM [TaxId:36329]
    Gene: dtd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3koda_
  • Chain 'B':
    Compound: D-tyrosyl-tRNA(Tyr) deacylase
    Species: PLASMODIUM FALCIPARUM [TaxId:36329]
    Gene: dtd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3kodb_
  • Chain 'C':
    Compound: D-tyrosyl-tRNA(Tyr) deacylase
    Species: PLASMODIUM FALCIPARUM [TaxId:36329]
    Gene: dtd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3kodc_
  • Chain 'D':
    Compound: D-tyrosyl-tRNA(Tyr) deacylase
    Species: PLASMODIUM FALCIPARUM [TaxId:36329]
    Gene: dtd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3kodd_
  • Chain 'E':
    Compound: D-tyrosyl-tRNA(Tyr) deacylase
    Species: PLASMODIUM FALCIPARUM [TaxId:36329]
    Gene: dtd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3kode_
  • Chain 'F':
    Compound: D-tyrosyl-tRNA(Tyr) deacylase
    Species: PLASMODIUM FALCIPARUM [TaxId:36329]
    Gene: dtd
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3kodf_
  • Heterogens: DSN

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3kodA (A:)
mrvviqrvkgailsvrkenigenekeleiiseiknglicflgihkndtwedalyiirkcl
nlrlwnndnktwdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkii
defkkqynddkikigkfgnymnidvtndgpvtiyidthdinlnk

    Sequence, based on observed residues (ATOM records): (download) 
    >3kodA (A:)
mrvviqrvkgailsvreleiiseiknglicflgihkndtwedalyiirkclnlrlwnndn
ktwdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkiidefkkqynd
dkikigkfgnymnidvtndgpvtiyidthdi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3kodB (B:)
mrvviqrvkgailsvrkenigenekeleiiseiknglicflgihkndtwedalyiirkcl
nlrlwnndnktwdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkii
defkkqynddkikigkfgnymnidvtndgpvtiyidthdinlnk

    Sequence, based on observed residues (ATOM records): (download) 
    >3kodB (B:)
mrvviqrvkgailsvrkenekeleiiseiknglicflgihkndtwedalyiirkclnlrl
wnndnktwdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkiidefk
kqynddkikigkfgnymnidvtndgpvtiyidthdin

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3kodC (C:)
mrvviqrvkgailsvrkenigenekeleiiseiknglicflgihkndtwedalyiirkcl
nlrlwnndnktwdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkii
defkkqynddkikigkfgnymnidvtndgpvtiyidthdinlnk

    Sequence, based on observed residues (ATOM records): (download) 
    >3kodC (C:)
mrvviqrvkgailsvrkenekeleiiseiknglicflgihkndtwedalyiirkclnlrl
wnndnktwdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkiidefk
kqynddkikigkfgnymnidvtndgpvtiyidthd

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3kodD (D:)
mrvviqrvkgailsvrkenigenekeleiiseiknglicflgihkndtwedalyiirkcl
nlrlwnndnktwdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkii
defkkqynddkikigkfgnymnidvtndgpvtiyidthdinlnk

    Sequence, based on observed residues (ATOM records): (download) 
    >3kodD (D:)
mrvviqrvkgailsvrkeleiiseiknglicflgihkndtwedalyiirkclnlrlwnnd
nktwdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkiidefkkqyn
ddkikigkfgnymnidvtndgpvtiyidthd

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3kodE (E:)
mrvviqrvkgailsvrkenigenekeleiiseiknglicflgihkndtwedalyiirkcl
nlrlwnndnktwdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkii
defkkqynddkikigkfgnymnidvtndgpvtiyidthdinlnk

    Sequence, based on observed residues (ATOM records): (download) 
    >3kodE (E:)
mrvviqrvkgailsveiiseiknglicflgihkndtwedalyiirkclnlrlwnndnktw
dknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkiidefkkqynddki
kigkfgnymnidvtndgpvtiyidthd

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3kodF (F:)
mrvviqrvkgailsvrkenigenekeleiiseiknglicflgihkndtwedalyiirkcl
nlrlwnndnktwdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkii
defkkqynddkikigkfgnymnidvtndgpvtiyidthdinlnk

    Sequence, based on observed residues (ATOM records): (download) 
    >3kodF (F:)
mrvviqrvkgailsvreleiiseiknglicflgihkndtwedalyiirkclnlrlwnndn
ktwdknvkdlnyellivsqftlfgntkkgnkpdfhlakepnealifynkiidefkkqynd
dkikigkfgnymnidvtndgpvtiyidthdi