PDB entry 3ko6

View 3ko6 on RCSB PDB site
Description: Crystal structure of yeast free methionine-R-sulfoxide reductase Ykg9 in complex with the substrate
Class: oxidoreductase
Keywords: Saccharomyces cerevisiae, methionine-R-sulfoxide reductase, substrate binding, catalytic mechanism, product dissociation, OXIDOREDUCTASE
Deposited on 2009-11-13, released 2010-11-17
The last revision prior to the SCOPe 2.07 freeze date was dated 2010-11-17, with a file datestamp of 2010-11-12.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: 0.21
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: UPF0067 GAF domain-containing protein YKL069W
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Gene: YKL069W
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ko6a_
  • Chain 'B':
    Compound: UPF0067 GAF domain-containing protein YKL069W
    Species: Saccharomyces cerevisiae [TaxId:559292]
    Gene: YKL069W
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ko6b_
  • Heterogens: SME, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ko6A (A:)
mgsstgfhhadhvnyssnlnkeeileqlllsyeglsdgqvnwvcnlsnassliwhayksl
avdinwagfyvtqaseentlilgpfqgkvacqmiqfgkgvcgtaastketqivpdvnkyp
ghiacdgetkseivvpiisndgktlgvididcldyegfdhvdkefleklaklinkscvfk

    Sequence, based on observed residues (ATOM records): (download) 
    >3ko6A (A:)
stgfhhadhvnyssnlnkeeileqlllsyeglsdgqvnwvcnlsnassliwhaykslavd
inwagfyvtqaseentlilgpfqgkvacqmiqfgkgvcgtaastketqivpdvnkypghi
acdgetkseivvpiisndgktlgvididcldyegfdhvdkefleklaklinkscvf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3ko6B (B:)
mgsstgfhhadhvnyssnlnkeeileqlllsyeglsdgqvnwvcnlsnassliwhayksl
avdinwagfyvtqaseentlilgpfqgkvacqmiqfgkgvcgtaastketqivpdvnkyp
ghiacdgetkseivvpiisndgktlgvididcldyegfdhvdkefleklaklinkscvfk

    Sequence, based on observed residues (ATOM records): (download) 
    >3ko6B (B:)
stgfhhadhvnyssnlnkeeileqlllsyeglsdgqvnwvcnlsnassliwhaykslavd
inwagfyvtqaseentlilgpfqgkvacqmiqfgkgvcgtaastketqivpdvnkypghi
acdgetkseivvpiisndgktlgvididcldyegfdhvdkefleklaklinkscvf