PDB entry 3iml

View 3iml on RCSB PDB site
Description: Crystal Structure Of S-Adenosylmethionine Synthetase From Burkholderia Pseudomallei
Class: transferase
Keywords: S-adenosylmethionine synthetase, structural genomics, ATP-binding, Cobalt, Magnesium, Metal-binding, Nucleotide-binding, One-carbon metabolism, Potassium, Transferase, Seattle Structural Genomics Center for Infectious Disease, SSGCID
Deposited on 2009-08-10, released 2009-09-22
The last revision prior to the SCOPe 2.07 freeze date was dated 2013-10-30, with a file datestamp of 2013-10-25.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: 0.22
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: s-adenosylmethionine synthetase
    Species: Burkholderia pseudomallei [TaxId:28450]
    Gene: metK, BPSL0212
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q63YH5 (4-End)
      • expression tag (3)
    Domains in SCOPe 2.07: d3imla1, d3imla2, d3imla3, d3imla4
  • Chain 'B':
    Compound: s-adenosylmethionine synthetase
    Species: Burkholderia pseudomallei [TaxId:28450]
    Gene: metK, BPSL0212
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3imlb1, d3imlb2, d3imlb3
  • Chain 'C':
    Compound: s-adenosylmethionine synthetase
    Species: Burkholderia pseudomallei [TaxId:28450]
    Gene: metK, BPSL0212
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3imlc1, d3imlc2, d3imlc3
  • Chain 'D':
    Compound: s-adenosylmethionine synthetase
    Species: Burkholderia pseudomallei [TaxId:28450]
    Gene: metK, BPSL0212
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3imld1, d3imld2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3imlA (A:)
    gpgsmandylftsesvseghpdkvadqisdaildailaqdkysrvaaetlcntglvvlag
    eitttanidyiqiardtikrigydntdygidyrgcavlvaydkqspdiaqgvdrahdnnl
    dqgagdqglmfgyacdetpelmplpihlshrlverqanlrrdgrlpwlrpdaksqvtvry
    vdgkphsidtvvlstqhapeidlpalreavieevikptlpadlikgdikflvnptgrfvi
    ggpqgdcgltgrkiivdtyggaaphgggafsgkdpskvdrsaayagryvaknivaaglas
    raliqvsyaigvaeptsvmvntfgtgrvsdetitklvrehfdlrpkgiiqmldllrpiye
    ktaayghfgreepefsweaadkalalaeaagvepavqva
    

    Sequence, based on observed residues (ATOM records): (download)
    >3imlA (A:)
    smandylftsesvseghpdkvadqisdaildailaqdkysrvaaetlcntglvvlageit
    ttanidyiqiardtikrigydgcavlvaydkqspnldqgagdqglmfgyacdetpelmpl
    pihlshrlverqanlrrdgrlpwlrpdaksqvtvryvdgkphsidtvvlstqhapeidlp
    alreavieevikptlpadlikgdikflvnptgrfviggpqgdcgltgrkiivdtyggaap
    hgggafsgkdpskvdrsaayagryvaknivaaglasraliqvsyaigvaeptsvmvntfg
    tgrvsdetitklvrehfdlrpkgiiqmldllrpiyektaayghfgreepefsweaadkal
    alaeaagv
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3imlB (B:)
    gpgsmandylftsesvseghpdkvadqisdaildailaqdkysrvaaetlcntglvvlag
    eitttanidyiqiardtikrigydntdygidyrgcavlvaydkqspdiaqgvdrahdnnl
    dqgagdqglmfgyacdetpelmplpihlshrlverqanlrrdgrlpwlrpdaksqvtvry
    vdgkphsidtvvlstqhapeidlpalreavieevikptlpadlikgdikflvnptgrfvi
    ggpqgdcgltgrkiivdtyggaaphgggafsgkdpskvdrsaayagryvaknivaaglas
    raliqvsyaigvaeptsvmvntfgtgrvsdetitklvrehfdlrpkgiiqmldllrpiye
    ktaayghfgreepefsweaadkalalaeaagvepavqva
    

    Sequence, based on observed residues (ATOM records): (download)
    >3imlB (B:)
    ylftsesvseghpdkvadqisdaildailaqdkysrvaaetlcntglvvlageitttani
    dyiqiardtikrigycavlvaydknldqgagdqglmfgyacdetpelmplpihlshrlve
    rqanlrrdgrlpwlrpdaksqvtvryvdgkphsidtvvlstqhapeidlpalreavieev
    ikptlpadlikgdikflvnptgrfviggpqgdcgltgrkiivdtyggaaphgggafsgkd
    pskvdrsaayagryvaknivaaglasraliqvsyaigvaeptsvmvntfgtgrvsdetit
    klvrehfdlrpkgiiqmldllrpiyektaayghfgreepefsweaadkalalaeaag
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3imlC (C:)
    gpgsmandylftsesvseghpdkvadqisdaildailaqdkysrvaaetlcntglvvlag
    eitttanidyiqiardtikrigydntdygidyrgcavlvaydkqspdiaqgvdrahdnnl
    dqgagdqglmfgyacdetpelmplpihlshrlverqanlrrdgrlpwlrpdaksqvtvry
    vdgkphsidtvvlstqhapeidlpalreavieevikptlpadlikgdikflvnptgrfvi
    ggpqgdcgltgrkiivdtyggaaphgggafsgkdpskvdrsaayagryvaknivaaglas
    raliqvsyaigvaeptsvmvntfgtgrvsdetitklvrehfdlrpkgiiqmldllrpiye
    ktaayghfgreepefsweaadkalalaeaagvepavqva
    

    Sequence, based on observed residues (ATOM records): (download)
    >3imlC (C:)
    dylftsesvseghpdkvadqisdaildailaqdkysrvaaetlcntglvvlageitttan
    idyiqiardtikrigygcavlvaydkqsldqgagdqglmfgyacdetpelmplpihlshr
    lverqanlrrdgrlpwlrpdaksqvtvryvdgkphsidtvvlstqhapeidlpalreavi
    eevikptlpadlikgdikflvnptgrfviggpqgdcgltgrkiivdtyggaaphgggafs
    gkdpskvdrsaayagryvaknivaaglasraliqvsyaigvaeptsvmvntftitklvre
    hfdlrpkgiiqmldllrpiyektaayghfgreepefsweaadk
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3imlD (D:)
    gpgsmandylftsesvseghpdkvadqisdaildailaqdkysrvaaetlcntglvvlag
    eitttanidyiqiardtikrigydntdygidyrgcavlvaydkqspdiaqgvdrahdnnl
    dqgagdqglmfgyacdetpelmplpihlshrlverqanlrrdgrlpwlrpdaksqvtvry
    vdgkphsidtvvlstqhapeidlpalreavieevikptlpadlikgdikflvnptgrfvi
    ggpqgdcgltgrkiivdtyggaaphgggafsgkdpskvdrsaayagryvaknivaaglas
    raliqvsyaigvaeptsvmvntfgtgrvsdetitklvrehfdlrpkgiiqmldllrpiye
    ktaayghfgreepefsweaadkalalaeaagvepavqva
    

    Sequence, based on observed residues (ATOM records): (download)
    >3imlD (D:)
    ylftsesvseghpdkvadqisdaildailaqdkysrvaaetlcntglvvlageitttani
    dyiqiardtikrigygcavlvaydkqqglmfgyacdetpelmplpihlshrlverqanlr
    rdgrlpwlrpdaksqvtvryvdgkphsidtvvlstqhapeidlpalreavieevikptlp
    adlikgdikflvnptgrfviggpqgdcgltgrkiivdtyggaaphgggafsgkdpskvdr
    saayagryvaknivaaglasraliqvsyafdlrpkgiiqmldllrpiyektaayghfgre
    epefsweaadk