PDB entry 3hds

View 3hds on RCSB PDB site
Description: Crystal structure of 4-methylmuconolactone methylisomerase in complex with MES
Class: isomerase
Keywords: ferredoxin, ferredoxin-like fold, beta-barrel, isomerase, 4-methylmuconolactone methylisomerase, biodegradation, ortho-cleavage
Deposited on 2009-05-07, released 2009-09-29
The last revision prior to the SCOPe 2.06 freeze date was dated 2014-01-22, with a file datestamp of 2014-01-17.
Experiment type: XRAY
Resolution: 1.45 Å
R-factor: 0.186
AEROSPACI score: 0.57 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 4-methylmuconolactone methylisomerase
    Species: Pseudomonas reinekei [TaxId:395598]
    Gene: mmlI
    Database cross-references and differences (RAF-indexed):
    • Uniprot C5MR76 (9-115)
      • expression tag (0-8)
    Domains in SCOPe 2.06: d3hdsa1, d3hdsa2
  • Chain 'B':
    Compound: 4-methylmuconolactone methylisomerase
    Species: Pseudomonas reinekei [TaxId:395598]
    Gene: mmlI
    Database cross-references and differences (RAF-indexed):
    • Uniprot C5MR76 (9-115)
      • expression tag (1-8)
    Domains in SCOPe 2.06: d3hdsb1, d3hdsb2
  • Chain 'C':
    Compound: 4-methylmuconolactone methylisomerase
    Species: Pseudomonas reinekei [TaxId:395598]
    Gene: mmlI
    Database cross-references and differences (RAF-indexed):
    • Uniprot C5MR76 (9-115)
      • expression tag (7-8)
    Domains in SCOPe 2.06: d3hdsc1, d3hdsc2
  • Chain 'D':
    Compound: 4-methylmuconolactone methylisomerase
    Species: Pseudomonas reinekei [TaxId:395598]
    Gene: mmlI
    Database cross-references and differences (RAF-indexed):
    • Uniprot C5MR76 (9-115)
      • expression tag (7-8)
    Domains in SCOPe 2.06: d3hdsd1, d3hdsd2
  • Chain 'E':
    Compound: short peptide ASWSA
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 3HDS (0-4)
  • Chain 'F':
    Compound: short peptide ASWSA
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 3HDS (0-4)
  • Heterogens: MES, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3hdsA (A:)
pqfekiegrmirilyllvkpesmsheqfrkecvvhfqmsagmpglhkyevrlvagnptdt
hvpyldvgridaigecwfaseeqyqvymesdirkawfehgkyfigqlkpfvteelv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3hdsB (B:)
pqfekiegrmirilyllvkpesmsheqfrkecvvhfqmsagmpglhkyevrlvagnptdt
hvpyldvgridaigecwfaseeqyqvymesdirkawfehgkyfigqlkpfvteelv

    Sequence, based on observed residues (ATOM records): (download) 
    >3hdsB (B:)
qfekiegrmirilyllvkpesmsheqfrkecvvhfqmsagmpglhkyevrlvagnptdth
vpyldvgridaigecwfaseeqyqvymesdirkawfehgkyfigqlkpfvteelv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3hdsC (C:)
pqfekiegrmirilyllvkpesmsheqfrkecvvhfqmsagmpglhkyevrlvagnptdt
hvpyldvgridaigecwfaseeqyqvymesdirkawfehgkyfigqlkpfvteelv

    Sequence, based on observed residues (ATOM records): (download) 
    >3hdsC (C:)
grmirilyllvkpesmsheqfrkecvvhfqmsagmpglhkyevrlvagnptdthvpyldv
gridaigecwfaseeqyqvymesdirkawfehgkyfigqlkpfvteelv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3hdsD (D:)
pqfekiegrmirilyllvkpesmsheqfrkecvvhfqmsagmpglhkyevrlvagnptdt
hvpyldvgridaigecwfaseeqyqvymesdirkawfehgkyfigqlkpfvteelv

    Sequence, based on observed residues (ATOM records): (download) 
    >3hdsD (D:)
grmirilyllvkpesmsheqfrkecvvhfqmsagmpglhkyevrlvagnptdthvpyldv
gridaigecwfaseeqyqvymesdirkawfehgkyfigqlkpfvteelv

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.