PDB entry 3gsm

View 3gsm on RCSB PDB site
Description: Vibrio cholerae family 3 glycoside hydrolase (NagZ) bound to N-Valeryl-PUGNAc
Class: hydrolase
Keywords: glycoside hydrolases, Cell cycle, Cell division, Cell shape, Cell wall biogenesis/degradation, Glycosidase, Hydrolase, Peptidoglycan synthesis
Deposited on 2009-03-27, released 2009-06-30
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.212
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Beta-hexosaminidase
    Species: Vibrio cholerae [TaxId:666]
    Gene: family 3 glycoside hydrolase NagZ, nagZ, VC_0692
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KU37 (0-End)
      • engineered (18)
      • engineered (21)
      • engineered (53)
    Domains in SCOPe 2.07: d3gsma_
  • Heterogens: VPU, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3gsmA (A:)
mgplwldvagyelsaedrailahptvggvilfgrnyhdnqqllalnkairqaaarpilig
vdqeggrvqrfregfsrippaqyyaraengvelaeqggwlmaaeliahdvdlsfapvldm
gfackaignrafgedvqtvlkhssaflrgmkavgmattgkhfpghgaviadshletpyde
retiaqdmaifraqieagvldammpahvvyphydaqpasgssywlkqvlreelgfkgivf
sddlsmegaavmggpvershqalvagcdmilicnkreaavevldnlpimevpqaeallkk
qqfsyselkrlerwqqasanmqrlieqfsehhhhhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3gsmA (A:)
mgplwldvagyelsaedrailahptvggvilfgrnyhdnqqllalnkairqaaarpilig
vdqeggrvqrfregfsrippaqyyaraengvelaeqggwlmaaeliahdvdlsfapvldm
gfackaignrafgedvqtvlkhssaflrgmkavgmattgkhfpghgaviadhletpyder
etiaqdmaifraqieagvldammpahvvyphydaqpasgssywlkqvlreelgfkgivfs
ddlsmvmggpvershqalvagcdmilicnkreaavevldnlpimevpqaeallkkqqfsy
selkrlerwqqasanmqrlieqfs