PDB entry 3ge1

View 3ge1 on RCSB PDB site
Description: 2.7 Angstrom Crystal Structure of Glycerol Kinase (glpK) from Staphylococcus aureus in Complex with ADP and Glycerol
Class: transferase
Keywords: Glycerol Kinase, Glycerol, ADP, idp00743, ATP-binding, Glycerol metabolism, Kinase, Nucleotide-binding, Transferase, Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID
Deposited on 2009-02-24, released 2009-03-24
The last revision prior to the SCOPe 2.03 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.194
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glycerol kinase
    Species: Staphylococcus aureus subsp. aureus COL [TaxId:93062]
    Gene: glpK, SACOL1320
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5HGD2 (3-500)
      • expression tag (2)
    Domains in SCOPe 2.03: d3ge1a1, d3ge1a2
  • Chain 'B':
    Compound: glycerol kinase
    Species: Staphylococcus aureus subsp. aureus COL [TaxId:93062]
    Gene: glpK, SACOL1320
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5HGD2 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.03: d3ge1b1, d3ge1b2
  • Chain 'C':
    Compound: glycerol kinase
    Species: Staphylococcus aureus subsp. aureus COL [TaxId:93062]
    Gene: glpK, SACOL1320
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3ge1c1, d3ge1c2
  • Chain 'D':
    Compound: glycerol kinase
    Species: Staphylococcus aureus subsp. aureus COL [TaxId:93062]
    Gene: glpK, SACOL1320
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3ge1d1, d3ge1d2
  • Heterogens: ADP, GOL, PO4, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ge1A (A:)
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gyeqtfrdktgllldpyfagtkvkwildnvegarekaengdllfgtidtwlvwklsgkaa
hitdysnasrtlmfnihdlewddellelltvpknmlpevkassevygktidyhfygqevp
iagvagdqqaalfgqacfergdvkntygtggfmlmntgdkavksesgllttiaygidgkv
nyalegsifvsgsaiqwlrdglrminsapqsesyatrvdstegvyvvpafvglgtpywds
eargaifgltrgtekehfiratleslcyqtrdvmeamskdsgidvqslrvdggavknnfi
mqfqadivntsverpeiqettalgaaflaglavgfweskddiaknwkleekfdpkmdege
reklyrgwkkaveatqvfkte

    Sequence, based on observed residues (ATOM records): (download) 
    >3ge1A (A:)
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tdysnasrtlmfnihdlewddellelltvpknmlpevkassevygktidyhfygqevpia
gvagdqqaalfgqacfergdvkntygtggfmlmntgdkavksesgllttiaygidgkvny
alegsifvsgsaiqwlrdglrminsapqsesyatrvdstegvyvvpafvglgtpywdsea
rgaifgltrgtekehfiratleslcyqtrdvmeamskdsgidvqslrvdggavknnfimq
fqadivntsverpeiqettalgaaflaglavgfweskddiaknwkleekfdpkmdegere
klyrgwkkaveatqvfkte

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3ge1B (B:)
snamekyilsidqgttssrailfnqkgeiagvaqrefkqyfpqsgwvehdaneiwtsvla
vmtevinendvradqiagigitnqrettvvwdkhtgrpiyhaivwqsrqtqsicselkqq
gyeqtfrdktgllldpyfagtkvkwildnvegarekaengdllfgtidtwlvwklsgkaa
hitdysnasrtlmfnihdlewddellelltvpknmlpevkassevygktidyhfygqevp
iagvagdqqaalfgqacfergdvkntygtggfmlmntgdkavksesgllttiaygidgkv
nyalegsifvsgsaiqwlrdglrminsapqsesyatrvdstegvyvvpafvglgtpywds
eargaifgltrgtekehfiratleslcyqtrdvmeamskdsgidvqslrvdggavknnfi
mqfqadivntsverpeiqettalgaaflaglavgfweskddiaknwkleekfdpkmdege
reklyrgwkkaveatqvfkte

    Sequence, based on observed residues (ATOM records): (download) 
    >3ge1B (B:)
amekyilsidqgttssrailfnqkgeiagvaqrefkqyfpqsgwvehdaneiwtsvlavm
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eqtfrdktgllldpyfagtkvkwildnvegarekaengdllfgtidtwlvwklsgkaahi
tdysnasrtlmfnihdlewddellelltvpknmlpevkassevygktidyhfygqevpia
gvagdqqaalfgqacfergdvkntygtggfmlmntgdkavksesgllttiaygidgkvny
alegsifvsgsaiqwlrdglrminsapqsesyatrvdstegvyvvpafvglgtpywdsea
rgaifgltrgtekehfiratleslcyqtrdvmeamskdsgidvqslrvdggavknnfimq
fqadivntsverpeiqettalgaaflaglavgfweskddiaknwkleekfdpkmdegere
klyrgwkkaveatqvfkt

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3ge1C (C:)
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gyeqtfrdktgllldpyfagtkvkwildnvegarekaengdllfgtidtwlvwklsgkaa
hitdysnasrtlmfnihdlewddellelltvpknmlpevkassevygktidyhfygqevp
iagvagdqqaalfgqacfergdvkntygtggfmlmntgdkavksesgllttiaygidgkv
nyalegsifvsgsaiqwlrdglrminsapqsesyatrvdstegvyvvpafvglgtpywds
eargaifgltrgtekehfiratleslcyqtrdvmeamskdsgidvqslrvdggavknnfi
mqfqadivntsverpeiqettalgaaflaglavgfweskddiaknwkleekfdpkmdege
reklyrgwkkaveatqvfkte

    Sequence, based on observed residues (ATOM records): (download) 
    >3ge1C (C:)
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qtfrdktgllldpyfagtkvkwildnvegarekaengdllfgtidtwlvwklsgkaahit
dysnasrtlmfnihdlewddellelltvpknmlpevkassevygktidyhfygqevpiag
vagdqqaalfgqacfergdvkntygtggfmlmntgdkavksesgllttiaygidgkvnya
legsifvsgsaiqwlrdglrminsapqsesyatrvdstegvyvvpafvglgtpywdsear
gaifgltrgtekehfiratleslcyqtrdvmeamskdsgidvqslrvdggavknnfimqf
qadivntsverpeiqettalgaaflaglavgfweskddiaknwkleekfdpkmdegerek
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  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3ge1D (D:)
snamekyilsidqgttssrailfnqkgeiagvaqrefkqyfpqsgwvehdaneiwtsvla
vmtevinendvradqiagigitnqrettvvwdkhtgrpiyhaivwqsrqtqsicselkqq
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hitdysnasrtlmfnihdlewddellelltvpknmlpevkassevygktidyhfygqevp
iagvagdqqaalfgqacfergdvkntygtggfmlmntgdkavksesgllttiaygidgkv
nyalegsifvsgsaiqwlrdglrminsapqsesyatrvdstegvyvvpafvglgtpywds
eargaifgltrgtekehfiratleslcyqtrdvmeamskdsgidvqslrvdggavknnfi
mqfqadivntsverpeiqettalgaaflaglavgfweskddiaknwkleekfdpkmdege
reklyrgwkkaveatqvfkte

    Sequence, based on observed residues (ATOM records): (download) 
    >3ge1D (D:)
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agdqqaalfgqacfergdvkntygtggfmlmntgdkavksesgllttiaygidgkvnyal
egsifvsgsaiqwlrdglrminsapqsesyatrvdstegvyvvpafvglgtpywdsearg
aifgltrgtekehfiratleslcyqtrdvmeamskdsgidvqslrvdggavknnfimqfq
adivntsverpeiqettalgaaflaglavgfweskddiaknwkleekfdpkmdegerekl
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