PDB entry 3g3b
View 3g3b on RCSB PDB site
Description: Structure of a lamprey variable lymphocyte receptor mutant in complex with a protein antigen
Class: hydrolase/immune system
Keywords: VLR, antibody, x-ray, crystallography, Allergen, Antimicrobial, Bacteriolytic enzyme, Glycosidase, Hydrolase, HYDROLASE/IMMUNE SYSTEM COMPLEX
Deposited on
2009-02-02, released
2009-06-23
The last revision prior to the SCOPe 2.05 freeze date was dated
2010-01-19, with a file datestamp of
2010-01-15.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.244
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: variable lymphocyte receptor VLRB.2D
Species: Petromyzon marinus [TaxId:7757]
Gene: VLR
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3g3ba_ - Chain 'B':
Compound: Lysozyme C
Species: Gallus gallus [TaxId:9031]
Gene: lysozyme, LYZ
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3g3bb_ - Chain 'C':
Compound: variable lymphocyte receptor VLRB.2D
Species: Petromyzon marinus [TaxId:7757]
Gene: VLR
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3g3bc_ - Chain 'D':
Compound: Lysozyme C
Species: Gallus gallus [TaxId:9031]
Gene: lysozyme, LYZ
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3g3bd_ - Chain 'E':
Compound: variable lymphocyte receptor VLRB.2D
Species: Petromyzon marinus [TaxId:7757]
Gene: VLR
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3g3be_ - Chain 'F':
Compound: Lysozyme C
Species: Gallus gallus [TaxId:9031]
Gene: lysozyme, LYZ
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3g3bf_ - Chain 'G':
Compound: variable lymphocyte receptor VLRB.2D
Species: Petromyzon marinus [TaxId:7757]
Gene: VLR
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: Lysozyme C
Species: Gallus gallus [TaxId:9031]
Gene: lysozyme, LYZ
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3g3bh_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3g3bA (A:)
macpsqcscsgttvdcsgkslasvptgiptttqvlylydnritklepgvfdrltqltrld
ldnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlrslthiwllnnpwdcacsd
ilylsrwisqhpwlvfgylnldhdsarcsgtntpvravtkastspskcpg
Sequence, based on observed residues (ATOM records): (download)
>3g3bA (A:)
acpsqcscsgttvdcsgkslasvptgiptttqvlylydnritklepgvfdrltqltrldl
dnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlrslthiwllnnpwdcacsdi
lylsrwisqhpwlvfgylnldhdsarcsgtntpvravtkastspskcpg
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3g3bB (B:)
kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
qawirgcrl
Sequence, based on observed residues (ATOM records): (download)
>3g3bB (B:)
kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
qawirgc
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3g3bC (C:)
macpsqcscsgttvdcsgkslasvptgiptttqvlylydnritklepgvfdrltqltrld
ldnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlrslthiwllnnpwdcacsd
ilylsrwisqhpwlvfgylnldhdsarcsgtntpvravtkastspskcpg
Sequence, based on observed residues (ATOM records): (download)
>3g3bC (C:)
acpsqcscsgttvdcsgkslasvptgiptttqvlylydnritklepgvfdrltqltrldl
dnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlrslthiwllnnpwdcacsdi
lylsrwisqhpwlvfgylnldhdsarcsgtntpvravtkastspskc
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3g3bD (D:)
kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
qawirgcrl
Sequence, based on observed residues (ATOM records): (download)
>3g3bD (D:)
kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
rwwcndgrtpgsrnlcnipcsallssditasvncakkivsgmnawvawrnrckgtdvqaw
irgc
- Chain 'E':
Sequence, based on SEQRES records: (download)
>3g3bE (E:)
macpsqcscsgttvdcsgkslasvptgiptttqvlylydnritklepgvfdrltqltrld
ldnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlrslthiwllnnpwdcacsd
ilylsrwisqhpwlvfgylnldhdsarcsgtntpvravtkastspskcpg
Sequence, based on observed residues (ATOM records): (download)
>3g3bE (E:)
acpsqcscsgttvdcsgkslasvptgiptttqvlylydnritklepgvfdrltqltrldl
dnnqltvlpagvfdkltqltqlslndnqlksiprgafdnlrslthiwllnnpwdilylsr
wisqhpwlvfgylnldhdsarcsgtntpvravtkastsp
- Chain 'F':
Sequence, based on SEQRES records: (download)
>3g3bF (F:)
kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
qawirgcrl
Sequence, based on observed residues (ATOM records): (download)
>3g3bF (F:)
kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgmnawvawrnrckgtdvqa
wirgc
- Chain 'G':
No sequence available.
- Chain 'H':
Sequence, based on SEQRES records: (download)
>3g3bH (H:)
kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
rwwcndgrtpgsrnlcnipcsallssditasvncakkivsdgngmnawvawrnrckgtdv
qawirgcrl
Sequence, based on observed residues (ATOM records): (download)
>3g3bH (H:)
kvfgrcelaaamkrhgldnyrgyslgnwvcaakfesnfntqatnrntdgstdygilqins
rwwcndgrtpgsrnlcnipcsallssditasvncakkivgmnawvawrnrckgtdvqawi
rgc