PDB entry 3f27

View 3f27 on RCSB PDB site
Description: Structure of Sox17 Bound to DNA
Class: Transcription/dna
Keywords: protein-DNA complex, HMG domain, endodermal, Activator, DNA-binding, Nucleus, Transcription, Transcription regulation, Transcription-dna COMPLEX
Deposited on 2008-10-29, released 2009-04-07
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.75 Å
R-factor: 0.243
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA (5'-d(*dgp*dtp*dcp*dtp*dcp*dtp*dap*dtp*dtp*dgp*dtp*dcp*dcp*dtp*dgp*dg)-3')
  • Chain 'B':
    Compound: DNA (5'-d(*dcp*dcp*dap*dgp*dgp*dap*dcp*dap*dap*dtp*dap*dgp*dap*dgp*dap*dc)-3')
  • Chain 'D':
    Compound: Transcription factor SOX-17
    Species: Mus musculus [TaxId:10090]
    Gene: Sox-17, Sox17
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3f27d_

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3f27D (D:)
gsftsrirrpmnafmvwakderkrlaqqnpdlhnaelskmlgkswkaltlaekrpfveea
erlrvqhmqdhpnykyrprrrkq

    Sequence, based on observed residues (ATOM records): (download) 
    >3f27D (D:)
irrpmnafmvwakderkrlaqqnpdlhnaelskmlgkswkaltlaekrpfveeaerlrvq
hmqdhpnykyrprr