PDB entry 3e6j

View 3e6j on RCSB PDB site
Description: Crystal Structure of Variable Lymphocyte Receptor (VLR) RBC36 in Complex with H-trisaccharide
Class: immune system
Keywords: Variable Lymphocyte Receptors, VLR, Leucine-rich repeat, LRR, Adaptive immunity, Immune system, Sea Lamprey, Jawless fish, Receptor
Deposited on 2008-08-15, released 2008-10-07
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 1.67 Å
R-factor: 0.148
AEROSPACI score: 0.59 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Variable lymphocyte receptor diversity region
    Species: Petromyzon marinus [TaxId:7757]
    Gene: VLR
    Database cross-references and differences (RAF-indexed):
    • PDB 3E6J (Start-228)
    Domains in SCOPe 2.07: d3e6ja_
  • Heterogens: DR2, SO4, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3e6jA (A:)
amvhhhhhhsaacpsqcscsgttvdcrskrhasvpagiptnaqilylhdnqitklepgvf
dslinlkelylgsnqlgalpvgvfdsltqltvldlgtnqltvlpsavfdrlvhlkelfmc
cnkltelprgierlthlthlaldqnqlksiphgafdrlsslthaylfgnpwdcecrdimy
lrnwvadhtsiamrwdgkavndpdsakcagtntpvravteastspskcp

    Sequence, based on observed residues (ATOM records): (download) 
    >3e6jA (A:)
aacpsqcscsgttvdcrskrhasvpagiptnaqilylhdnqitklepgvfdslinlkely
lgsnqlgalpvgvfdsltqltvldlgtnqltvlpsavfdrlvhlkelfmccnkltelprg
ierlthlthlaldqnqlksiphgafdrlsslthaylfgnpwdcecrdimylrnwvadhts
iamrwdgkavndpdsakcagtntpvravteastspskcp