PDB entry 3dkr
View 3dkr on RCSB PDB site
Description: Snapshots of esterase D from lactobacillus rhamnosus: Insights into a rotation driven catalytic mechanism
Class: hydrolase
Keywords: alpha beta hydrolase, mechanism, catalytic triad, rotation, esterase
Deposited on
2008-06-25, released
2009-06-30
The last revision prior to the SCOPe 2.06 freeze date was dated
2009-06-30, with a file datestamp of
2009-06-26.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.167
AEROSPACI score: 0.61
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Esterase D
Species: Lactobacillus rhamnosus [TaxId:486408]
Gene: EstD
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3dkra_ - Heterogens: ACT, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3dkrA (A:)
gamgirnsifrkpqpfeyegtdtgvvllhaytgspndmnfmaralqrsgygvyvplfsgh
gtvepldiltkgnpdiwwaessaavahmtakyakvfvfglslggifamkaletlpgitag
gvfsspilpgkhhlvpgflkyaeymnrlagksdestqilaylpgqlaaidqfattvaadl
nlvkqptfigqagqdelvdgrlayqlrdalinaarvdfhwyddakhvitvnsahhaleed
viafmqqeneg
Sequence, based on observed residues (ATOM records): (download)
>3dkrA (A:)
frkpqpfeyegtdtgvvllhaytgspndmnfmaralqrsgygvyvplfsghgtvepldil
tkgnpdiwwaessaavahmtakyakvfvfglslggifamkaletlpgitaggvfsspilp
gkhhlvpgflkyaeymnrlagksdestqilaylpgqlaaidqfattvaadlnlvkqptfi
gqagqdelvdgrlayqlrdalinaarvdfhwyddakhvitvnsahhaleedviafmqqen
e