PDB entry 3d6r

View 3d6r on RCSB PDB site
Description: Structure of an avian influenza A virus NS1 protein effector domain
Class: viral protein
Keywords: Influenza, NS1, effector domain, Alternative splicing, Cytoplasm, Host-virus interaction, Interferon antiviral system evasion, Nucleus, RNA-binding, Suppressor of RNA silencing, VIRAL PROTEIN
Deposited on 2008-05-20, released 2008-08-12
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.185
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Non-structural protein 1
    Species: Influenza A virus [TaxId:385582]
    Gene: NS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3d6ra_
  • Chain 'B':
    Compound: Non-structural protein 1
    Species: Influenza A virus [TaxId:385582]
    Gene: NS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3d6rb1
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3d6rA (A:)
tdenlkiaiasspapryitdmsieeisrewymlmprqkitgglmvkmdqaimdkritlka
nfsvlfdqletlvslraftddgaivaeispipsmpghstedvknaigiligglewndnsi
raseniqrfawgirdenggpplppkqkrymarrvesev

    Sequence, based on observed residues (ATOM records): (download) 
    >3d6rA (A:)
yitdmsieeisrewymlmprqkitgglmvkmdqaimdkritlkanfsvlfdqletlvslr
aftddgaivaeispipsmpghstedvknaigiligglewndnsiraseniqrfa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3d6rB (B:)
tdenlkiaiasspapryitdmsieeisrewymlmprqkitgglmvkmdqaimdkritlka
nfsvlfdqletlvslraftddgaivaeispipsmpghstedvknaigiligglewndnsi
raseniqrfawgirdenggpplppkqkrymarrvesev

    Sequence, based on observed residues (ATOM records): (download) 
    >3d6rB (B:)
sspapryitdmsieeisrewymlmprqkitgglmvkmdqaimdkritlkanfsvlfdqle
tlvslraftddgaivaeispipsmpghstedvknaigiligglewndnsiraseniqrfa
qkrymar