PDB entry 3d6r
View 3d6r on RCSB PDB site
Description: Structure of an avian influenza A virus NS1 protein effector domain
Class: viral protein
Keywords: Influenza, NS1, effector domain, Alternative splicing, Cytoplasm, Host-virus interaction, Interferon antiviral system evasion, Nucleus, RNA-binding, Suppressor of RNA silencing, VIRAL PROTEIN
Deposited on
2008-05-20, released
2008-08-12
The last revision prior to the SCOPe 2.04 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.185
AEROSPACI score: 0.47
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Non-structural protein 1
Species: Influenza A virus [TaxId:385582]
Gene: NS
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3d6ra_ - Chain 'B':
Compound: Non-structural protein 1
Species: Influenza A virus [TaxId:385582]
Gene: NS
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3d6rb1 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3d6rA (A:)
tdenlkiaiasspapryitdmsieeisrewymlmprqkitgglmvkmdqaimdkritlka
nfsvlfdqletlvslraftddgaivaeispipsmpghstedvknaigiligglewndnsi
raseniqrfawgirdenggpplppkqkrymarrvesev
Sequence, based on observed residues (ATOM records): (download)
>3d6rA (A:)
yitdmsieeisrewymlmprqkitgglmvkmdqaimdkritlkanfsvlfdqletlvslr
aftddgaivaeispipsmpghstedvknaigiligglewndnsiraseniqrfa
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3d6rB (B:)
tdenlkiaiasspapryitdmsieeisrewymlmprqkitgglmvkmdqaimdkritlka
nfsvlfdqletlvslraftddgaivaeispipsmpghstedvknaigiligglewndnsi
raseniqrfawgirdenggpplppkqkrymarrvesev
Sequence, based on observed residues (ATOM records): (download)
>3d6rB (B:)
sspapryitdmsieeisrewymlmprqkitgglmvkmdqaimdkritlkanfsvlfdqle
tlvslraftddgaivaeispipsmpghstedvknaigiligglewndnsiraseniqrfa
qkrymar