PDB entry 3cdf
View 3cdf on RCSB PDB site
Description: kI O18/O8 Y87H immunoglobulin light chain variable domain
Class: immune system
Keywords: Greek key beta barrel, amyloid, immunoglobulin, light chain, variable domain, IMMUNE SYSTEM
Deposited on
2008-02-26, released
2008-09-02
The last revision prior to the SCOPe 2.02 freeze date was dated
2009-06-09, with a file datestamp of
2009-06-05.
Experiment type: XRAY
Resolution: 1.53 Å
R-factor: 0.191
AEROSPACI score: 0.61
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: immuglobulin light chain
Species: Homo sapiens [TaxId:9606]
Gene: kI O18/O8 germline
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3cdfa_ - Chain 'B':
Compound: immuglobulin light chain
Species: Homo sapiens [TaxId:9606]
Gene: kI O18/O8 germline
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3cdfb_ - Chain 'C':
Compound: immuglobulin light chain
Species: Homo sapiens [TaxId:9606]
Gene: kI O18/O8 germline
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3cdfc_ - Chain 'D':
Compound: immuglobulin light chain
Species: Homo sapiens [TaxId:9606]
Gene: kI O18/O8 germline
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3cdfd_ - Chain 'E':
Compound: immuglobulin light chain
Species: Homo sapiens [TaxId:9606]
Gene: kI O18/O8 germline
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3cdfe_ - Chain 'F':
Compound: immuglobulin light chain
Species: Homo sapiens [TaxId:9606]
Gene: kI O18/O8 germline
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3cdff_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3cdfA (A:)
stdiqmtqspsslsasvgdrvtitcqasqdisnylnwyqqkpgkapklliydasnletgv
psrfsgsgsgtdftftisslqpediatyhcqqydnlpytfgqgtkleik
Sequence, based on observed residues (ATOM records): (download)
>3cdfA (A:)
tdiqmtqspsslsasvgdrvtitcqasqdisnylnwyqqkpgkapklliydasnletgvp
srfsgsgsgtdftftisslqpediatyhcqqydnlpytfgqgtkleik
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3cdfB (B:)
stdiqmtqspsslsasvgdrvtitcqasqdisnylnwyqqkpgkapklliydasnletgv
psrfsgsgsgtdftftisslqpediatyhcqqydnlpytfgqgtkleik
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3cdfC (C:)
stdiqmtqspsslsasvgdrvtitcqasqdisnylnwyqqkpgkapklliydasnletgv
psrfsgsgsgtdftftisslqpediatyhcqqydnlpytfgqgtkleik
Sequence, based on observed residues (ATOM records): (download)
>3cdfC (C:)
tdiqmtqspsslsasvgdrvtitcqasqdisnylnwyqqkpgkapklliydasnletgvp
srfsgsgsgtdftftisslqpediatyhcqqydnlpytfgqgtkleik
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>3cdfD (D:)
stdiqmtqspsslsasvgdrvtitcqasqdisnylnwyqqkpgkapklliydasnletgv
psrfsgsgsgtdftftisslqpediatyhcqqydnlpytfgqgtkleik
- Chain 'E':
Sequence, based on SEQRES records: (download)
>3cdfE (E:)
stdiqmtqspsslsasvgdrvtitcqasqdisnylnwyqqkpgkapklliydasnletgv
psrfsgsgsgtdftftisslqpediatyhcqqydnlpytfgqgtkleik
Sequence, based on observed residues (ATOM records): (download)
>3cdfE (E:)
tdiqmtqspsslsasvgdrvtitcqasqdisnylnwyqqkpgkapklliydasnletgvp
srfsgsgsgtdftftisslqpediatyhcqqydnlpytfgqgtkleik
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>3cdfF (F:)
stdiqmtqspsslsasvgdrvtitcqasqdisnylnwyqqkpgkapklliydasnletgv
psrfsgsgsgtdftftisslqpediatyhcqqydnlpytfgqgtkleik