PDB entry 3cdd

View 3cdd on RCSB PDB site
Description: Crystal structure of prophage MuSo2, 43 kDa tail protein from Shewanella oneidensis
Class: structural protein
Keywords: MuSo2, Shewanella oneidensis MR-1, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, STRUCTURAL PROTEIN
Deposited on 2008-02-26, released 2008-03-11
The last revision prior to the SCOP 1.75 freeze date was dated 2008-03-11, with a file datestamp of 2008-03-07.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.204
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Prophage MuSo2, 43 kDa tail protein
    Species: Shewanella oneidensis MR-1
    Gene: SO_2699
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d3cdda1, d3cdda2
  • Chain 'B':
    Compound: Prophage MuSo2, 43 kDa tail protein
    Species: Shewanella oneidensis MR-1
    Gene: SO_2699
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d3cddb1, d3cddb2
  • Chain 'C':
    Compound: Prophage MuSo2, 43 kDa tail protein
    Species: Shewanella oneidensis MR-1
    Gene: SO_2699
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d3cddc1, d3cddc2
  • Chain 'D':
    Compound: Prophage MuSo2, 43 kDa tail protein
    Species: Shewanella oneidensis MR-1
    Gene: SO_2699
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d3cddd1, d3cddd2
  • Chain 'E':
    Compound: Prophage MuSo2, 43 kDa tail protein
    Species: Shewanella oneidensis MR-1
    Gene: SO_2699
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EDP4 (3-End)
      • expression tag (1-2)
    Domains in SCOP 1.75: d3cdde1, d3cdde2
  • Chain 'F':
    Compound: Prophage MuSo2, 43 kDa tail protein
    Species: Shewanella oneidensis MR-1
    Gene: SO_2699
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d3cddf1, d3cddf2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3cddA (A:)
qghseeivlkaggkiyqgwtkigitrsleamsgafdlemtykflgndaqykafiepikqg
qactvdiggervitgyvddwvpsydestitisvsgrdktadlvdcsidypsgqfnnqtlt
qiadivckpfgikvivntdvgepfqriqieqgetphellarlakqrgvlltsdtfgnlvi
trasktkagvslilgdnvkaargrfswrqrfskftikaagaahgqwdsaglptvggikad
vtdseigryrpliivneevttaegaakrgqwerqrsigksnmaeytvtgwripqtgklwn
intlvpvideimgldeemliasilfseddagrlavisvvrpdamdipaqivkdtklggst
w

    Sequence, based on observed residues (ATOM records): (download) 
    >3cddA (A:)
seeivlkaggkiyqgwtkigitrsleamsgafdlemtykflgndaqykafiepikqgqac
tvdiggervitgyvddwvpsydestitisvsgrdktadlvdcsidypsgqfnnqtltqia
divckpfgikvivntdvgepfqriqieqgetphellarlakqrgvlltsdtfgnlvitra
sktkagvslilgdnvkaargrfswrqrfskftikaakadvtdseigryrpliivneevta
egaakrgqwerqrsigksnmaeytvtgwripqtgklwnintlvpvideimgldeemlias
ilfseddagrlavisvvrpdamdipaqi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3cddB (B:)
qghseeivlkaggkiyqgwtkigitrsleamsgafdlemtykflgndaqykafiepikqg
qactvdiggervitgyvddwvpsydestitisvsgrdktadlvdcsidypsgqfnnqtlt
qiadivckpfgikvivntdvgepfqriqieqgetphellarlakqrgvlltsdtfgnlvi
trasktkagvslilgdnvkaargrfswrqrfskftikaagaahgqwdsaglptvggikad
vtdseigryrpliivneevttaegaakrgqwerqrsigksnmaeytvtgwripqtgklwn
intlvpvideimgldeemliasilfseddagrlavisvvrpdamdipaqivkdtklggst
w

    Sequence, based on observed residues (ATOM records): (download) 
    >3cddB (B:)
eeivlkaggkiyqgwtkigitrsleamsgafdlemtykflgndaqykafiepikqgqact
vdiggervitgyvddwvpsydestitisvsgrdktadlvdcsidypsgqfnnqtltqiad
ivckpfgikvivntdvgepfqriqieqgetphellarlakqrgvlltsdtfgnlvitras
ktkagvslilgdnvkaargrfswrqrfskftikggikadvtdseigryrpliivneevtt
aegaakrgqwerqrsigksnmaeytvtgwripqtgklwnintlvpvideimgldeemlia
silfseddagrlavisvvrpdamdip

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3cddC (C:)
qghseeivlkaggkiyqgwtkigitrsleamsgafdlemtykflgndaqykafiepikqg
qactvdiggervitgyvddwvpsydestitisvsgrdktadlvdcsidypsgqfnnqtlt
qiadivckpfgikvivntdvgepfqriqieqgetphellarlakqrgvlltsdtfgnlvi
trasktkagvslilgdnvkaargrfswrqrfskftikaagaahgqwdsaglptvggikad
vtdseigryrpliivneevttaegaakrgqwerqrsigksnmaeytvtgwripqtgklwn
intlvpvideimgldeemliasilfseddagrlavisvvrpdamdipaqivkdtklggst
w

    Sequence, based on observed residues (ATOM records): (download) 
    >3cddC (C:)
eeivlkaggkiyqgwtkigitrsleamsgafdlemtykfqykafiepikqgqactvdigg
ervitgyvddwvpsydestitisvsgrdktadlvdcsidypsgqfnnqtltqiadivckp
fgikvivntdvgepfqriqieqgetphellarlakqrgvlltsdtfgnlvitrasktkag
vslilgdnvkaargrfswrqrfskftikadsaglptvggikadvtdseigryrpliivne
evttaegaakrgqwerqrsigksnmaeytvtgwripqtgklwnintlvpvideimgldee
mliasilfseddagrlavisvvrpdamd

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3cddD (D:)
qghseeivlkaggkiyqgwtkigitrsleamsgafdlemtykflgndaqykafiepikqg
qactvdiggervitgyvddwvpsydestitisvsgrdktadlvdcsidypsgqfnnqtlt
qiadivckpfgikvivntdvgepfqriqieqgetphellarlakqrgvlltsdtfgnlvi
trasktkagvslilgdnvkaargrfswrqrfskftikaagaahgqwdsaglptvggikad
vtdseigryrpliivneevttaegaakrgqwerqrsigksnmaeytvtgwripqtgklwn
intlvpvideimgldeemliasilfseddagrlavisvvrpdamdipaqivkdtklggst
w

    Sequence, based on observed residues (ATOM records): (download) 
    >3cddD (D:)
seeivlkaggkiyqgwtkigitrsleamsgafdlemtykfndaqykafiepikqgqactv
diggervitgyvddwvpsydestitisvsgrdktadlvdcsidypsgqfnnqtltqiadi
vckpfgikvivntdvgepfqriqieqgetphellarlakqrgvlltsdtfgnlvitrask
tkagvslilgdnvkaargrfswrqrfskftikdsaglptvggikadvtdseigryrplii
vneevttaegaakrgqwerqrsigksnmaeytvtgwripqtgklwnintlvpvideimgl
deemliasilfseddagrlavisvvrpdamd

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3cddE (E:)
qghseeivlkaggkiyqgwtkigitrsleamsgafdlemtykflgndaqykafiepikqg
qactvdiggervitgyvddwvpsydestitisvsgrdktadlvdcsidypsgqfnnqtlt
qiadivckpfgikvivntdvgepfqriqieqgetphellarlakqrgvlltsdtfgnlvi
trasktkagvslilgdnvkaargrfswrqrfskftikaagaahgqwdsaglptvggikad
vtdseigryrpliivneevttaegaakrgqwerqrsigksnmaeytvtgwripqtgklwn
intlvpvideimgldeemliasilfseddagrlavisvvrpdamdipaqivkdtklggst
w

    Sequence, based on observed residues (ATOM records): (download) 
    >3cddE (E:)
ghseeivlkaggkiyqgwtkigitrsleamsgafdlemtykflgndaqykafiepikqgq
actvdiggervitgyvddwvpsydestitisvsgrdktadlvdcsidypsgqfnnqtltq
iadivckpfgikvivntdvgepfqriqieqgetphellarlakqrgvlltsdtfgnlvit
rasktkagvslilgdnvkaargrfswrqrfskftikdvtdseigryrpliivneevttae
gaakrgqwerqrsigksnmaeytvtgwripqtgklwnintlvpvideimgldeemliasi
lfseddagrlavisvvrpdamd

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3cddF (F:)
qghseeivlkaggkiyqgwtkigitrsleamsgafdlemtykflgndaqykafiepikqg
qactvdiggervitgyvddwvpsydestitisvsgrdktadlvdcsidypsgqfnnqtlt
qiadivckpfgikvivntdvgepfqriqieqgetphellarlakqrgvlltsdtfgnlvi
trasktkagvslilgdnvkaargrfswrqrfskftikaagaahgqwdsaglptvggikad
vtdseigryrpliivneevttaegaakrgqwerqrsigksnmaeytvtgwripqtgklwn
intlvpvideimgldeemliasilfseddagrlavisvvrpdamdipaqivkdtklggst
w

    Sequence, based on observed residues (ATOM records): (download) 
    >3cddF (F:)
eeivlkaggkiyqgwtkigitrsleamsgafdlemtykfndaqykafiepikqgqactvd
iggervitgyvddwvpsydestitisvsgrdktadlvdcsidypsgqfnnqtltqiadiv
ckpfgikvivntdvgepfqriqieqgetphellarlakqrgvlltsdtfgnlvitraskt
kagvslilgdnvkaargrfswrqrfskftikaagikadvtdseigryrpliivneevtta
egaakrgqwerqrsigksnmaeytvtgwripqtgklwnintlvpvideimgldeemlias
ilfseddagrlavisvvrpdamdip