PDB entry 3b07

View 3b07 on RCSB PDB site
Description: Crystal structure of octameric pore form of gamma-hemolysin from Staphylococcus aureus
Class: toxin
Keywords: protein complex, TOXIN
Deposited on 2011-06-06, released 2011-10-12
The last revision prior to the SCOPe 2.01 freeze date was dated 2011-12-21, with a file datestamp of 2011-12-16.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.207
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Gamma-hemolysin component B
    Species: Staphylococcus aureus [TaxId:158878]
    Gene: SAV2421
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3b07a_
  • Chain 'B':
    Compound: Gamma-hemolysin component A
    Species: Staphylococcus aureus [TaxId:158878]
    Gene: SAV2419
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3b07b_
  • Chain 'C':
    Compound: Gamma-hemolysin component B
    Species: Staphylococcus aureus [TaxId:158878]
    Gene: SAV2421
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3b07c_
  • Chain 'D':
    Compound: Gamma-hemolysin component A
    Species: Staphylococcus aureus [TaxId:158878]
    Gene: SAV2419
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3b07d_
  • Chain 'E':
    Compound: Gamma-hemolysin component B
    Species: Staphylococcus aureus [TaxId:158878]
    Gene: SAV2421
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3b07e_
  • Chain 'F':
    Compound: Gamma-hemolysin component A
    Species: Staphylococcus aureus [TaxId:158878]
    Gene: SAV2419
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3b07f_
  • Chain 'G':
    Compound: Gamma-hemolysin component B
    Species: Staphylococcus aureus [TaxId:158878]
    Gene: SAV2421
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3b07g_
  • Chain 'H':
    Compound: Gamma-hemolysin component A
    Species: Staphylococcus aureus [TaxId:158878]
    Gene: SAV2419
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3b07h_
  • Heterogens: MPD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3b07A (A:)
    mghhhhhhamegkitpvsvkkvddkvtlykttatadsdkfkisqiltfnfikdksydkdt
    lvlkatgninsgfvkpnpndydfsklywgakynvsissqsndsvnvvdyapknqneefqv
    qntlgytfggdisisnglsgglngntafsetinykqesyrttlsrntnyknvgwgveahk
    imnngwgpygrdsfhptygnelflagrqssayagqnfiaqhqmpllsrsnfnpeflsvls
    hrqdgakkskitvtyqremdlyqicwngfywaganyknfktrtfkstyeidwenhkvkll
    dtketennk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3b07A (A:)
    vtlykttatadsdkfkisqiltfnfikdksydkdtlvlkatgninsgfvkpnpndydfsk
    lywgakynvsissqsndsvnvvdyapknqneefqvqntlgytfggdisisnglsgglngn
    tafsetinykqesyrttlsrntnyknvgwgveahkimnngwgpygrdsfhptygnelfla
    grqssayagqnfiaqhqmpllsrsnfnpeflsvlshrqdgakkskitvtyqremdlyqic
    wngfywaganyknfktrtfkstyeidwenhkvklldtketennk
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3b07B (B:)
    mghhhhhhamenkiedigqgaeiikrtqditskrlaitqniqfdfvkdkkynkdalvvkm
    qgfissrttysdlkkypyikrmiwpfqynislktkdsnvdlinylpknkidsadvsqklg
    yniggnfqsapsiggsgsfnysktisynqknyvtevesqnskgvkwgvkansfvtpngqv
    saydqylfaqdptgpaardyfvpdnqlppliqsgfnpsfittlshergkgdksefeityg
    rnmdatyayvtrhrlavdrkhdafknrnvtvkyevnwkthevkiksitpk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3b07B (B:)
    aeiikrtqditskrlaitqniqfdfvkdkkynkdalvvkmqgfissrttysdlkkypyik
    rmiwpfqynislktkdsnvdlinylpknkidsadvsqklgyniggnfqsapsiggsgsfn
    ysktisynqknyvtevesqnskgvkwgvkansfvtpngqvsaydqylfaqdptgpaardy
    fvpdnqlppliqsgfnpsfittlshergkgdksefeitygrnmdatyayvtrhrlavdrk
    hdafknrnvtvkyevnwkthevkiksitpk
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3b07C (C:)
    mghhhhhhamegkitpvsvkkvddkvtlykttatadsdkfkisqiltfnfikdksydkdt
    lvlkatgninsgfvkpnpndydfsklywgakynvsissqsndsvnvvdyapknqneefqv
    qntlgytfggdisisnglsgglngntafsetinykqesyrttlsrntnyknvgwgveahk
    imnngwgpygrdsfhptygnelflagrqssayagqnfiaqhqmpllsrsnfnpeflsvls
    hrqdgakkskitvtyqremdlyqicwngfywaganyknfktrtfkstyeidwenhkvkll
    dtketennk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3b07C (C:)
    vtlykttatadsdkfkisqiltfnfikdksydkdtlvlkatgninsgfvkpnpndydfsk
    lywgakynvsissqsndsvnvvdyapknqneefqvqntlgytfggdisisnglsgglngn
    tafsetinykqesyrttlsrntnyknvgwgveahkimnngwgpygrdsfhptygnelfla
    grqssayagqnfiaqhqmpllsrsnfnpeflsvlshrqdgakkskitvtyqremdlyqic
    wngfywaganyknfktrtfkstyeidwenhkvklldtketennk
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3b07D (D:)
    mghhhhhhamenkiedigqgaeiikrtqditskrlaitqniqfdfvkdkkynkdalvvkm
    qgfissrttysdlkkypyikrmiwpfqynislktkdsnvdlinylpknkidsadvsqklg
    yniggnfqsapsiggsgsfnysktisynqknyvtevesqnskgvkwgvkansfvtpngqv
    saydqylfaqdptgpaardyfvpdnqlppliqsgfnpsfittlshergkgdksefeityg
    rnmdatyayvtrhrlavdrkhdafknrnvtvkyevnwkthevkiksitpk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3b07D (D:)
    aeiikrtqditskrlaitqniqfdfvkdkkynkdalvvkmqgfissrttysdlkkypyik
    rmiwpfqynislktkdsnvdlinylpknkidsadvsqklgyniggnfqsapsiggsgsfn
    ysktisynqknyvtevesqnskgvkwgvkansfvtpngqvsaydqylfaqdptgpaardy
    fvpdnqlppliqsgfnpsfittlshergkgdksefeitygrnmdatyayvtrhrlavdrk
    hdafknrnvtvkyevnwkthevkiksitpk
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3b07E (E:)
    mghhhhhhamegkitpvsvkkvddkvtlykttatadsdkfkisqiltfnfikdksydkdt
    lvlkatgninsgfvkpnpndydfsklywgakynvsissqsndsvnvvdyapknqneefqv
    qntlgytfggdisisnglsgglngntafsetinykqesyrttlsrntnyknvgwgveahk
    imnngwgpygrdsfhptygnelflagrqssayagqnfiaqhqmpllsrsnfnpeflsvls
    hrqdgakkskitvtyqremdlyqicwngfywaganyknfktrtfkstyeidwenhkvkll
    dtketennk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3b07E (E:)
    vtlykttatadsdkfkisqiltfnfikdksydkdtlvlkatgninsgfvkpnpndydfsk
    lywgakynvsissqsndsvnvvdyapknqneefqvqntlgytfggdisisnglsgglngn
    tafsetinykqesyrttlsrntnyknvgwgveahkimnngwgpygrdsfhptygnelfla
    grqssayagqnfiaqhqmpllsrsnfnpeflsvlshrqdgakkskitvtyqremdlyqic
    wngfywaganyknfktrtfkstyeidwenhkvklldtketennk
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3b07F (F:)
    mghhhhhhamenkiedigqgaeiikrtqditskrlaitqniqfdfvkdkkynkdalvvkm
    qgfissrttysdlkkypyikrmiwpfqynislktkdsnvdlinylpknkidsadvsqklg
    yniggnfqsapsiggsgsfnysktisynqknyvtevesqnskgvkwgvkansfvtpngqv
    saydqylfaqdptgpaardyfvpdnqlppliqsgfnpsfittlshergkgdksefeityg
    rnmdatyayvtrhrlavdrkhdafknrnvtvkyevnwkthevkiksitpk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3b07F (F:)
    aeiikrtqditskrlaitqniqfdfvkdkkynkdalvvkmqgfissrttysdlkkypyik
    rmiwpfqynislktkdsnvdlinylpknkidsadvsqklgyniggnfqsapsiggsgsfn
    ysktisynqknyvtevesqnskgvkwgvkansfvtpngqvsaydqylfaqdptgpaardy
    fvpdnqlppliqsgfnpsfittlshergkgdksefeitygrnmdatyayvtrhrlavdrk
    hdafknrnvtvkyevnwkthevkiksitpk
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >3b07G (G:)
    mghhhhhhamegkitpvsvkkvddkvtlykttatadsdkfkisqiltfnfikdksydkdt
    lvlkatgninsgfvkpnpndydfsklywgakynvsissqsndsvnvvdyapknqneefqv
    qntlgytfggdisisnglsgglngntafsetinykqesyrttlsrntnyknvgwgveahk
    imnngwgpygrdsfhptygnelflagrqssayagqnfiaqhqmpllsrsnfnpeflsvls
    hrqdgakkskitvtyqremdlyqicwngfywaganyknfktrtfkstyeidwenhkvkll
    dtketennk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3b07G (G:)
    vtlykttatadsdkfkisqiltfnfikdksydkdtlvlkatgninsgfvkpnpndydfsk
    lywgakynvsissqsndsvnvvdyapknqneefqvqntlgytfggdisisnglsgglngn
    tafsetinykqesyrttlsrntnyknvgwgveahkimnngwgpygrdsfhptygnelfla
    grqssayagqnfiaqhqmpllsrsnfnpeflsvlshrqdgakkskitvtyqremdlyqic
    wngfywaganyknfktrtfkstyeidwenhkvklldtketennk
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >3b07H (H:)
    mghhhhhhamenkiedigqgaeiikrtqditskrlaitqniqfdfvkdkkynkdalvvkm
    qgfissrttysdlkkypyikrmiwpfqynislktkdsnvdlinylpknkidsadvsqklg
    yniggnfqsapsiggsgsfnysktisynqknyvtevesqnskgvkwgvkansfvtpngqv
    saydqylfaqdptgpaardyfvpdnqlppliqsgfnpsfittlshergkgdksefeityg
    rnmdatyayvtrhrlavdrkhdafknrnvtvkyevnwkthevkiksitpk
    

    Sequence, based on observed residues (ATOM records): (download)
    >3b07H (H:)
    aeiikrtqditskrlaitqniqfdfvkdkkynkdalvvkmqgfissrttysdlkkypyik
    rmiwpfqynislktkdsnvdlinylpknkidsadvsqklgyniggnfqsapsiggsgsfn
    ysktisynqknyvtevesqnskgvkwgvkansfvtpngqvsaydqylfaqdptgpaardy
    fvpdnqlppliqsgfnpsfittlshergkgdksefeitygrnmdatyayvtrhrlavdrk
    hdafknrnvtvkyevnwkthevkiksitpk