PDB entry 3auj

View 3auj on RCSB PDB site
Description: Structure of diol dehydratase complexed with glycerol
Class: lyase
Keywords: alpha/beta barrel, lyase
Deposited on 2011-02-07, released 2012-02-22
The last revision prior to the SCOPe 2.07 freeze date was dated 2013-06-19, with a file datestamp of 2013-06-14.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.186
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: diol dehydrase alpha subunit
    Species: Klebsiella oxytoca [TaxId:571]
    Gene: pddA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3auja_
  • Chain 'B':
    Compound: diol dehydrase beta subunit
    Species: Klebsiella oxytoca [TaxId:571]
    Gene: pddB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3aujb_
  • Chain 'E':
    Compound: diol dehydrase beta subunit
    Species: Klebsiella oxytoca [TaxId:571]
    Gene: pddB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3auje_
  • Chain 'G':
    Compound: diol dehydrase gamma subunit
    Species: Klebsiella oxytoca [TaxId:571]
    Gene: pddC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3aujg_
  • Chain 'L':
    Compound: diol dehydrase alpha subunit
    Species: Klebsiella oxytoca [TaxId:571]
    Gene: pddA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3aujl_
  • Chain 'M':
    Compound: diol dehydrase gamma subunit
    Species: Klebsiella oxytoca [TaxId:571]
    Gene: pddC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3aujm_
  • Heterogens: GOL, CA, PO4, B12, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3aujA (A:)
mrskrfealakrpvnqdgfvkewieegfiamespndpkpsikivngavteldgkpvsdfd
lidhfiaryginlnraeevmamdsvklanmlcdpnvkrseivplttamtpakivevvshm
nvvemmmamqkmrarrtpsqqahvtnvkdnpvqiaadaaegawrgfdeqettvavaryap
fnaiallvgsqvgrpgvltqcsleeatelklgmlghtcyaetisvygtepvftdgddtpw
skgflassyasrglkmrftsgsgsevqmgyaegksmlylearciyitkaagvqglqngsv
scigvpsavpsgiravlaenlicssldlecassndqtfthsdmrrtarllmqflpgtdfi
ssgysavpnydnmfagsnedaedfddynviqrdlkvdgglrpvreedviairnkaaralq
avfagmglppitdeeveaatyahgskdmpernivedikfaqeiinknrnglevvkalaqg
gftdvaqdmlniqkakltgdylhtsaiivgdgqvlsavndvndyagpatgyrlqgerwee
iknipgaldpneid

    Sequence, based on observed residues (ATOM records): (download) 
    >3aujA (A:)
mrskrfealakrpvnqdgfvkewieegfiamespndpkpsikivngavteldgkpvsdfd
lidhfiaryginlnraeevmamdsvklanmlcdpnvkrseivplttamtpakivevvshm
nvvemmmamqkmrarrtpsqqahvtnvkdnpvqiaadaaegawrgfdeqettvavaryap
fnaiallvgsqvgrpgvltqcsleeatelklgmlghtcyaetisvygtepvftdgddtpw
skgflassyasrglkmrftsgsgsevqmgyaegksmlylearciyitkaagvqglqngsv
scigvpsavpsgiravlaenlicssldlecassndqtfthsdmrrtarllmqflpgtdfi
ssgysavpnydnmfagsnedaedfddynviqrdlkvdgglrpvreedviairnkaaralq
avfagmglppitdeeveaatyahgskdmpernivedikfaqeiinknrnglevvkalaqg
gftdvaqdmlniqkakltgdylhtsaiivgdgqvlsavndvndyagpatgyrlqgerwee
iknipgaldpne

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3aujB (B:)
meinekllrqiiedvlsemkgsdkpvsfnapaasaapqatppagdgfltevgearqgtqq
deviiavgpafglaqtvnivgiphksilreviagieeegikarvircfkssdvafvaveg
nrlsgsgisigiqskgttvihqqglpplsnlelfpqaplltletyrqigknaaryakres
pqpvptlndqmarpkyqaksailhiketkyvvtgknpqelrval

    Sequence, based on observed residues (ATOM records): (download) 
    >3aujB (B:)
gfltevgearqgtqqdeviiavgpafglaqtvnivgiphksilreviagieeegikarvi
rcfkssdvafvavegnrlsgsgisigiqskgttvihqqglpplsnlelfpqaplltlety
rqigknaaryakrespqpvptlndqmarpkyqaksailhiketkyvvtgknpqelrval

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3aujE (E:)
meinekllrqiiedvlsemkgsdkpvsfnapaasaapqatppagdgfltevgearqgtqq
deviiavgpafglaqtvnivgiphksilreviagieeegikarvircfkssdvafvaveg
nrlsgsgisigiqskgttvihqqglpplsnlelfpqaplltletyrqigknaaryakres
pqpvptlndqmarpkyqaksailhiketkyvvtgknpqelrval

    Sequence, based on observed residues (ATOM records): (download) 
    >3aujE (E:)
dgfltevgearqgtqqdeviiavgpafglaqtvnivgiphksilreviagieeegikarv
ircfkssdvafvavegnrlsgsgisigiqskgttvihqqglpplsnlelfpqaplltlet
yrqigknaaryakrespqpvptlndqmarpkyqaksailhiketkyvvtgknpqelrval

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3aujG (G:)
mntdaiesmvrdvlsrmnslqgeapaaapaaggasrsarvsdyplankhpewvktatnkt
lddftlenvlsnkvtaqdmritpetlrlqasiakdagrdrlamnferaaeltavpddril
eiynalrpyrstkeellaiaddlesryqakicaafvreaatlyverkklkgdd

    Sequence, based on observed residues (ATOM records): (download) 
    >3aujG (G:)
srsarvsdyplankhpewvktatnktlddftlenvlsnkvtaqdmritpetlrlqasiak
dagrdrlamnferaaeltavpddrileiynalrpyrstkeellaiaddlesryqakicaa
fvreaatlyverkklkgdd

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >3aujL (L:)
mrskrfealakrpvnqdgfvkewieegfiamespndpkpsikivngavteldgkpvsdfd
lidhfiaryginlnraeevmamdsvklanmlcdpnvkrseivplttamtpakivevvshm
nvvemmmamqkmrarrtpsqqahvtnvkdnpvqiaadaaegawrgfdeqettvavaryap
fnaiallvgsqvgrpgvltqcsleeatelklgmlghtcyaetisvygtepvftdgddtpw
skgflassyasrglkmrftsgsgsevqmgyaegksmlylearciyitkaagvqglqngsv
scigvpsavpsgiravlaenlicssldlecassndqtfthsdmrrtarllmqflpgtdfi
ssgysavpnydnmfagsnedaedfddynviqrdlkvdgglrpvreedviairnkaaralq
avfagmglppitdeeveaatyahgskdmpernivedikfaqeiinknrnglevvkalaqg
gftdvaqdmlniqkakltgdylhtsaiivgdgqvlsavndvndyagpatgyrlqgerwee
iknipgaldpneid

    Sequence, based on observed residues (ATOM records): (download) 
    >3aujL (L:)
mrskrfealakrpvnqdgfvkewieegfiamespndpkpsikivngavteldgkpvsdfd
lidhfiaryginlnraeevmamdsvklanmlcdpnvkrseivplttamtpakivevvshm
nvvemmmamqkmrarrtpsqqahvtnvkdnpvqiaadaaegawrgfdeqettvavaryap
fnaiallvgsqvgrpgvltqcsleeatelklgmlghtcyaetisvygtepvftdgddtpw
skgflassyasrglkmrftsgsgsevqmgyaegksmlylearciyitkaagvqglqngsv
scigvpsavpsgiravlaenlicssldlecassndqtfthsdmrrtarllmqflpgtdfi
ssgysavpnydnmfagsnedaedfddynviqrdlkvdgglrpvreedviairnkaaralq
avfagmglppitdeeveaatyahgskdmpernivedikfaqeiinknrnglevvkalaqg
gftdvaqdmlniqkakltgdylhtsaiivgdgqvlsavndvndyagpatgyrlqgerwee
iknipgaldpn

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >3aujM (M:)
mntdaiesmvrdvlsrmnslqgeapaaapaaggasrsarvsdyplankhpewvktatnkt
lddftlenvlsnkvtaqdmritpetlrlqasiakdagrdrlamnferaaeltavpddril
eiynalrpyrstkeellaiaddlesryqakicaafvreaatlyverkklkgdd

    Sequence, based on observed residues (ATOM records): (download) 
    >3aujM (M:)
rsarvsdyplankhpewvktatnktlddftlenvlsnkvtaqdmritpetlrlqasiakd
agrdrlamnferaaeltavpddrileiynalrpyrstkeellaiaddlesryqakicaaf
vreaatlyverkklkgdd