PDB entry 3abz

View 3abz on RCSB PDB site
Description: Crystal structure of Se-Met labeled Beta-glucosidase from Kluyveromyces marxianus
Class: hydrolase
Keywords: Glycoside hydrolase family3 beta-glucosidase, PA14 domain, HYDROLASE
Deposited on 2009-12-25, released 2010-08-11
The last revision prior to the SCOPe 2.06 freeze date was dated 2013-10-30, with a file datestamp of 2013-10-25.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.163
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Beta-glucosidase I
    Species: Kluyveromyces marxianus [TaxId:4911]
    Gene: Bgl, bglI
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3abza1, d3abza2, d3abza3, d3abza4
  • Chain 'B':
    Compound: Beta-glucosidase I
    Species: Kluyveromyces marxianus [TaxId:4911]
    Gene: Bgl, bglI
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3abzb1, d3abzb2, d3abzb3, d3abzb4
  • Chain 'C':
    Compound: Beta-glucosidase I
    Species: Kluyveromyces marxianus [TaxId:4911]
    Gene: Bgl, bglI
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3abzc1, d3abzc2, d3abzc3, d3abzc4
  • Chain 'D':
    Compound: Beta-glucosidase I
    Species: Kluyveromyces marxianus [TaxId:4911]
    Gene: Bgl, bglI
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3abzd1, d3abzd2, d3abzd3, d3abzd4
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3abzA (A:)
mskfdveqllselnqdekisllsavdfwhtkkierlgipavrvsdgpngirgtkffdgvp
sgcfpngtglastfdrdlletagklmakesiaknaavilgpttnmqrgplggrgfesfse
dpylagmatssvvkgmqgegiaatvkhfvcndledqrfssnsivseralreiylepfrla
vkhanpvcimtaynkvngehcsqskkllidilrdewkwdgmlmsdwfgtyttaaaikngl
diefpgptrwrtralvshslnsreqittedvddrvrqvlkmikfvvdnlektgivengpe
stsnntketsdllrkiaadsivllknknnilplkkedniivigpnakaktssgggsasmn
syyvvspyegivnklgkevdytvgayshksigglaesslidaakpadaensgliakfysn
pveersddeepfhvtkvnrsnvhlfdfkhekvdpknpyffvtltgqyvpqedgdyifslq
vygsglfylndeliidqkhnqergsfcfgagtkertkkltlkkgqvynvrveygsgptsg
lvgefgaggfqagvikaidddeeirnaaelaakhdkavliiglngewetegydrenmdlp
krtnelvravlkanpntvivnqsgtpvefpwledanalvqawyggnelgnaiadvlygdv
vpngklslswpfklqdnpaflnfktefgrviygedifvgyryyeklqrkvafpfgyglsy
ttfeldisdfkvtddkiaisvdvkntgdkfagsevvqvyfsalnskvsrpvkelkgfekv
hlepgekktvnidlelkdaisyfneelgkwhveageylvsvgtssddilsvkefkvekel
ywkgl

    Sequence, based on observed residues (ATOM records): (download) 
    >3abzA (A:)
skfdveqllselnqdekisllsavdfwhtkkierlgipavrvsdgpngirgtkffdgvps
gcfpngtglastfdrdlletagklmakesiaknaavilgpttnmqrgplggrgfesfsed
pylagmatssvvkgmqgegiaatvkhfvcndledqrfssnsivseralreiylepfrlav
khanpvcimtaynkvngehcsqskkllidilrdewkwdgmlmsdwfgtyttaaaikngld
iefpgptrwrtralvshslnsreqittedvddrvrqvlkmikfvvdnlektgivengpes
tsnntketsdllrkiaadsivllknknnilplkkedniivigpnakaktssgggsasmns
yyvvspyegivnklgkevdytvgayshksigglaesslidaakpadaensgliakfysnp
veersddeepfhvtkvnrsnvhlfdfkhekvdpknpyffvtltgqyvpqedgdyifslqv
ygsglfylndeliidqkhnqergsfcfgagtkertkkltlkkgqvynvrveygsgptsgl
vgefgaggfqagvikaidddeeirnaaelaakhdkavliiglngewetegydrenmdlpk
rtnelvravlkanpntvivnqsgtpvefpwledanalvqawyggnelgnaiadvlygdvv
pngklslswpfklqdnpaflnfktefgrviygedifvgyryyeklqrkvafpfgyglsyt
tfeldisdfkvtddkiaisvdvkntgdkfagsevvqvyfsalnskvsrpvkelkgfekvh
lepgekktvnidlelkdaisyfneelgkwhveageylvsvgtssddilsvkefkvekely
wkgl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3abzB (B:)
mskfdveqllselnqdekisllsavdfwhtkkierlgipavrvsdgpngirgtkffdgvp
sgcfpngtglastfdrdlletagklmakesiaknaavilgpttnmqrgplggrgfesfse
dpylagmatssvvkgmqgegiaatvkhfvcndledqrfssnsivseralreiylepfrla
vkhanpvcimtaynkvngehcsqskkllidilrdewkwdgmlmsdwfgtyttaaaikngl
diefpgptrwrtralvshslnsreqittedvddrvrqvlkmikfvvdnlektgivengpe
stsnntketsdllrkiaadsivllknknnilplkkedniivigpnakaktssgggsasmn
syyvvspyegivnklgkevdytvgayshksigglaesslidaakpadaensgliakfysn
pveersddeepfhvtkvnrsnvhlfdfkhekvdpknpyffvtltgqyvpqedgdyifslq
vygsglfylndeliidqkhnqergsfcfgagtkertkkltlkkgqvynvrveygsgptsg
lvgefgaggfqagvikaidddeeirnaaelaakhdkavliiglngewetegydrenmdlp
krtnelvravlkanpntvivnqsgtpvefpwledanalvqawyggnelgnaiadvlygdv
vpngklslswpfklqdnpaflnfktefgrviygedifvgyryyeklqrkvafpfgyglsy
ttfeldisdfkvtddkiaisvdvkntgdkfagsevvqvyfsalnskvsrpvkelkgfekv
hlepgekktvnidlelkdaisyfneelgkwhveageylvsvgtssddilsvkefkvekel
ywkgl

    Sequence, based on observed residues (ATOM records): (download) 
    >3abzB (B:)
skfdveqllselnqdekisllsavdfwhtkkierlgipavrvsdgpngirgtkffdgvps
gcfpngtglastfdrdlletagklmakesiaknaavilgpttnmqrgplggrgfesfsed
pylagmatssvvkgmqgegiaatvkhfvcndledqrfssnsivseralreiylepfrlav
khanpvcimtaynkvngehcsqskkllidilrdewkwdgmlmsdwfgtyttaaaikngld
iefpgptrwrtralvshslnsreqittedvddrvrqvlkmikfvvdnlektgivengpes
tsnntketsdllrkiaadsivllknknnilplkkedniivigpnakaktssgggsasmns
yyvvspyegivnklgkevdytvgayshksigglaesslkpadaensgliakfysnpveer
sdfhvtkvnrsnvhlfdfkhekvdyffvtltgqyvpqedgdyifslqvygsglfylndel
iidgtkertkkltlkkgqvynvrveygsgptaggfqagvikaidddeeirnaaelaakhd
kavliiglngewetegydrenmdlpkrtnelvravlkanpntvivnqsgtpvefpwleda
nalvqawyggnelgnaiadvlygdvvpngklslswpfklqdnpaflnfktefgrviyged
ifvgyryyeklqrkvafpfgyglsyttfeldisdfkvtddkiaisvdvkntgdkfagsev
vqvyfsalnskvsrpvkelkgfekvhlepgekktvnidlelkdaisyfneelgkwhveag
eylvsvgtssddilsvkefkvekelywkgl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3abzC (C:)
mskfdveqllselnqdekisllsavdfwhtkkierlgipavrvsdgpngirgtkffdgvp
sgcfpngtglastfdrdlletagklmakesiaknaavilgpttnmqrgplggrgfesfse
dpylagmatssvvkgmqgegiaatvkhfvcndledqrfssnsivseralreiylepfrla
vkhanpvcimtaynkvngehcsqskkllidilrdewkwdgmlmsdwfgtyttaaaikngl
diefpgptrwrtralvshslnsreqittedvddrvrqvlkmikfvvdnlektgivengpe
stsnntketsdllrkiaadsivllknknnilplkkedniivigpnakaktssgggsasmn
syyvvspyegivnklgkevdytvgayshksigglaesslidaakpadaensgliakfysn
pveersddeepfhvtkvnrsnvhlfdfkhekvdpknpyffvtltgqyvpqedgdyifslq
vygsglfylndeliidqkhnqergsfcfgagtkertkkltlkkgqvynvrveygsgptsg
lvgefgaggfqagvikaidddeeirnaaelaakhdkavliiglngewetegydrenmdlp
krtnelvravlkanpntvivnqsgtpvefpwledanalvqawyggnelgnaiadvlygdv
vpngklslswpfklqdnpaflnfktefgrviygedifvgyryyeklqrkvafpfgyglsy
ttfeldisdfkvtddkiaisvdvkntgdkfagsevvqvyfsalnskvsrpvkelkgfekv
hlepgekktvnidlelkdaisyfneelgkwhveageylvsvgtssddilsvkefkvekel
ywkgl

    Sequence, based on observed residues (ATOM records): (download) 
    >3abzC (C:)
skfdveqllselnqdekisllsavdfwhtkkierlgipavrvsdgpngirgtkffdgvps
gcfpngtglastfdrdlletagklmakesiaknaavilgpttnmqrgplggrgfesfsed
pylagmatssvvkgmqgegiaatvkhfvcndledqrfssnsivseralreiylepfrlav
khanpvcimtaynkvngehcsqskkllidilrdewkwdgmlmsdwfgtyttaaaikngld
iefpgptrwrtralvshslnsreqittedvddrvrqvlkmikfvvdnlektgivengpes
tsnntketsdllrkiaadsivllknknnilplkkedniivigpnakaktssgggsasmns
yyvvspyegivnklgkevdytvgayshksigglaesslidaakpadaensgliakfysnp
veersddeepfhvtkvnrsnvhlfdfkhekvdpknpyffvtltgqyvpqedgdyifslqv
ygsglfylndeliidqkhnqergsfcfgagtkertkkltlkkgqvynvrveygsgpgagg
fqagvikaidddeeirnaaelaakhdkavliiglngewetegydrenmdlpkrtnelvra
vlkanpntvivnqsgtpvefpwledanalvqawyggnelgnaiadvlygdvvpngklsls
wpfklqdnpaflnfktefgrviygedifvgyryyeklqrkvafpfgyglsyttfeldisd
fkvtddkiaisvdvkntgdkfagsevvqvyfsalnskvsrpvkelkgfekvhlepgekkt
vnidlelkdaisyfneelgkwhveageylvsvgtssddilsvkefkvekelywkgl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3abzD (D:)
mskfdveqllselnqdekisllsavdfwhtkkierlgipavrvsdgpngirgtkffdgvp
sgcfpngtglastfdrdlletagklmakesiaknaavilgpttnmqrgplggrgfesfse
dpylagmatssvvkgmqgegiaatvkhfvcndledqrfssnsivseralreiylepfrla
vkhanpvcimtaynkvngehcsqskkllidilrdewkwdgmlmsdwfgtyttaaaikngl
diefpgptrwrtralvshslnsreqittedvddrvrqvlkmikfvvdnlektgivengpe
stsnntketsdllrkiaadsivllknknnilplkkedniivigpnakaktssgggsasmn
syyvvspyegivnklgkevdytvgayshksigglaesslidaakpadaensgliakfysn
pveersddeepfhvtkvnrsnvhlfdfkhekvdpknpyffvtltgqyvpqedgdyifslq
vygsglfylndeliidqkhnqergsfcfgagtkertkkltlkkgqvynvrveygsgptsg
lvgefgaggfqagvikaidddeeirnaaelaakhdkavliiglngewetegydrenmdlp
krtnelvravlkanpntvivnqsgtpvefpwledanalvqawyggnelgnaiadvlygdv
vpngklslswpfklqdnpaflnfktefgrviygedifvgyryyeklqrkvafpfgyglsy
ttfeldisdfkvtddkiaisvdvkntgdkfagsevvqvyfsalnskvsrpvkelkgfekv
hlepgekktvnidlelkdaisyfneelgkwhveageylvsvgtssddilsvkefkvekel
ywkgl

    Sequence, based on observed residues (ATOM records): (download) 
    >3abzD (D:)
skfdveqllselnqdekisllsavdfwhtkkierlgipavrvsdgpngirgtkffdgvps
gcfpngtglastfdrdlletagklmakesiaknaavilgpttnmqrgplggrgfesfsed
pylagmatssvvkgmqgegiaatvkhfvcndledqrfssnsivseralreiylepfrlav
khanpvcimtaynkvngehcsqskkllidilrdewkwdgmlmsdwfgtyttaaaikngld
iefpgptrwrtralvshslnsreqittedvddrvrqvlkmikfvvdnlektgivengpes
tsnntketsdllrkiaadsivllknknnilplkkedniivigpnakaktssgggsasmns
yyvvspyegivnklgkevdytvgayshksigglaesslidaakpadaensgliakfysnp
veeepfhvtkvnrsnvhlfdfkhekvdpknpyffvtltgqyvpqedgdyifslqvygsgl
fylndeliidqkhnqergsfcfgagtkertkkltlkkgqvynvrveygsgptsgaggfqa
gvikaidddeeirnaaelaakhdkavliiglngewetegydrenmdlpkrtnelvravlk
anpntvivnqsgtpvefpwledanalvqawyggnelgnaiadvlygdvvpngklslswpf
klqdnpaflnfktefgrviygedifvgyryyeklqrkvafpfgyglsyttfeldisdfkv
tddkiaisvdvkntgdkfagsevvqvyfsalnskvsrpvkelkgfekvhlepgekktvni
dlelkdaisyfneelgkwhveageylvsvgtssddilsvkefkvekelywkgl