PDB entry 2zol

View 2zol on RCSB PDB site
Description: Crystal structure of H-2Db in complex with the W513S variant of JHMV epitope S510
Class: immune system
Keywords: Immune System, Ig fold, Glycoprotein, Immune response, Membrane, MHC I, Transmembrane, Immunoglobulin domain, Polymorphism, Secreted, Cleavage on pair of basic residues, Coiled coil, Envelope protein, Fusion protein, Host-virus interaction, Virion, Virulence
Deposited on 2008-05-22, released 2008-06-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-11-06, with a file datestamp of 2019-11-01.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: H-2 class I histocompatibility antigen, D-B alpha chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2zola1, d2zola2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2zolb_
  • Chain 'C':
    Compound: H-2 class I histocompatibility antigen, D-B alpha chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2zolc1, d2zolc2
  • Chain 'D':
    Compound: Beta-2-microglobulin
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2zold_
  • Chain 'E':
    Compound: 9-meric peptide from Spike glycoprotein
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q02385 (0-8)
      • modified residue (0)
      • engineered (3)
  • Chain 'F':
    Compound: 9-meric peptide from Spike glycoprotein
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q02385 (0-8)
      • modified residue (0)
      • engineered (3)
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2zolA (A:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatll
rtdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgt
fqkwasvvvplgkeqnytcrvyheglpepltlrwerwe

    Sequence, based on observed residues (ATOM records): (download) 
    >2zolA (A:)
phsmryfetavsrpgepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeywere
tqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayegrdy
ialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatllrtd
spkahvthhprskgevtlrcwalgfypaditltwmelvetrpagdgtfqkwasvvvplqn
ytcrvyheglpepltlrw

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2zolB (B:)
miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
wsfyilahteftptetdtyacrvkhdsmaepktvywdrdm

    Sequence, based on observed residues (ATOM records): (download) 
    >2zolB (B:)
qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
fyilahteftptetdtyacrvkhdsmaepktvywdrdm

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2zolC (C:)
gphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeyw
eretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayeg
rdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatll
rtdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgt
fqkwasvvvplgkeqnytcrvyheglpepltlrwerwe

    Sequence, based on observed residues (ATOM records): (download) 
    >2zolC (C:)
phsmryfetavsrpgepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeywere
tqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayegrdy
ialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatllrtd
spkahvthhprskgevtlrcwalgfypaditltwmelvetrpagdgtfqkwasvvvqnyt
crvyheglpepltlrw

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2zolD (D:)
miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
wsfyilahteftptetdtyacrvkhdsmaepktvywdrdm

    Sequence, based on observed residues (ATOM records): (download) 
    >2zolD (D:)
qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
fyilahteftptetdtyacrvkhdsmaepktvywdrdm

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.