PDB entry 2zo9

View 2zo9 on RCSB PDB site
Description: Malonate-bound structure of the glycerophosphodiesterase from Enterobacter aerogenes (GpdQ) and characterization of the native Fe2+ metal ion preference
Class: hydrolase
Keywords: malonate, metalloenzyme, zinc, iron, phosphodiesterase, Hydrolase
Deposited on 2008-05-07, released 2008-10-07
The last revision prior to the SCOP 1.75 freeze date was dated 2008-10-07, with a file datestamp of 2008-10-03.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.171
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'B':
    Compound: Phosphohydrolase
    Species: Enterobacter aerogenes [TaxId:548]
    Gene: GpdQ
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6XBH1 (0-End)
      • see remark 999 (223)
      • see remark 999 (226)
    Domains in SCOP 1.75: d2zo9b1
  • Chain 'C':
    Compound: Phosphohydrolase
    Species: Enterobacter aerogenes [TaxId:548]
    Gene: GpdQ
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6XBH1 (0-End)
      • see remark 999 (223)
      • see remark 999 (226)
    Domains in SCOP 1.75: d2zo9c1
  • Heterogens: FE2, MLI, HOH

PDB Chain Sequences:

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2zo9B (B:)
mllahisdthfrsrgeklygfidvnaanadvvsqlnalrerpdavvvsgdivncgrpeey
qvarqilgslnyplylipgnhddkalfleylqplcpqlgsdannmrcavddfatrllfid
ssragtskgwltdetiswleaqlfeggdkpatifmhhpplplgnaqmdpiacenghrlla
lverfpsltrifcghnhsltmtqyrqalistlpgtvhqvpychadtdpyydlspasclmh
rqvgeqwvsyqhslahyagpwlydeniscpteer

    Sequence, based on observed residues (ATOM records): (download) 
    >2zo9B (B:)
mllahisdthfrsrgeklygfidvnaanadvvsqlnalrerpdavvvsgdivncgrpeey
qvarqilgslnyplylipgnhddkalfleylqplcpqlgsdannmrcavddfatrllfid
ssragtskgwltdetiswleaqlfeggdkpatifmhhpplplgnaqmdpiacenghrlla
lverfpsltrifcghnhsltmtqyrqalistlpgtvhqvpychadtdpyydlspasclmh
rqvgeqwvsyqhslahyagpwlydeniscpt

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2zo9C (C:)
mllahisdthfrsrgeklygfidvnaanadvvsqlnalrerpdavvvsgdivncgrpeey
qvarqilgslnyplylipgnhddkalfleylqplcpqlgsdannmrcavddfatrllfid
ssragtskgwltdetiswleaqlfeggdkpatifmhhpplplgnaqmdpiacenghrlla
lverfpsltrifcghnhsltmtqyrqalistlpgtvhqvpychadtdpyydlspasclmh
rqvgeqwvsyqhslahyagpwlydeniscpteer

    Sequence, based on observed residues (ATOM records): (download) 
    >2zo9C (C:)
mllahisdthfrsrgeklygfidvnaanadvvsqlnalrerpdavvvsgdivncgrpeey
qvarqilgslnyplylipgnhddkalfleylqplcpqlgsdannmrcavddfatrllfid
ssragtskgwltdetiswleaqlfeggdkpatifmhhpplplgnaqmdpiacenghrlla
lverfpsltrifcghnhsltmtqyrqalistlpgtvhqvpychadtdpyydlspasclmh
rqvgeqwvsyqhslahyagpwlydeniscpt