PDB entry 2z48

View 2z48 on RCSB PDB site
Description: Crystal Structure of Hemolytic Lectin CEL-III Complexed with GalNac
Class: toxin
Keywords: Lectin, CEL-III, Hemolysis, Hemagglutination, Pore-forming, Calcium, Magnesium, GalNac, TOXIN
Deposited on 2007-06-13, released 2007-10-30
The last revision prior to the SCOPe 2.02 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.186
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hemolytic lectin CEL-III
    Species: Cucumaria echinata [TaxId:40245]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q868M7 (Start-431)
      • see remark 999 (14-15)
      • see remark 999 (35)
      • see remark 999 (47)
      • see remark 999 (91)
      • see remark 999 (94)
      • see remark 999 (96)
      • see remark 999 (121)
      • see remark 999 (145)
      • see remark 999 (172)
      • see remark 999 (203)
      • see remark 999 (339)
      • see remark 999 (403)
    Domains in SCOPe 2.02: d2z48a1, d2z48a2, d2z48a3
  • Chain 'B':
    Compound: hemolytic lectin CEL-III
    Species: Cucumaria echinata [TaxId:40245]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q868M7 (Start-431)
      • see remark 999 (14-15)
      • see remark 999 (35)
      • see remark 999 (47)
      • see remark 999 (91)
      • see remark 999 (94)
      • see remark 999 (96)
      • see remark 999 (121)
      • see remark 999 (145)
      • see remark 999 (172)
      • see remark 999 (203)
      • see remark 999 (339)
      • see remark 999 (403)
    Domains in SCOPe 2.02: d2z48b1, d2z48b2, d2z48b3
  • Heterogens: A2G, NGA, CA, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2z48A (A:)
evlctnpldigelrsfkskqcvdivgnqgsgniatydcdglsdqqiiicgdgtirnearn
ycftpdgsgnanvmsspctlypeipssqrwrqgrrktftdnggieqvateiinlasgkcl
diegsdgtgdigvydcqnlddqyfyvrsrgpelfygrlrneksdlcldvegsdgkgnvlm
yscednldqwfryyengeivnaksgmcldvegsdgsgnvgiyrcddlrdqmwsrpnaycn
gdycsflnkesnkcldvsgdqgtgdvgtwqcdglpdqrfkwvfddwevptatwnmvgcdq
ngkvsqqisntisfsstvtagvavevsstiekgvifakatvsvkvtaslskawtnsqsgt
taitytcdnydsdeeftrgcmwqlaiettevksgdllvwnpqivkctrsntapgcapftk
canedctfctdi

    Sequence, based on observed residues (ATOM records): (download) 
    >2z48A (A:)
vlctnpldigelrsfkskqcvdivgnqgsgniatydcdglsdqqiiicgdgtirnearny
cftpdgsgnanvmsspctlypeipssqrwrqgrrktftdnggieqvateiinlasgkcld
iegsdgtgdigvydcqnlddqyfyvrsrgpelfygrlrneksdlcldvegsdgkgnvlmy
scednldqwfryyengeivnaksgmcldvegsdgsgnvgiyrcddlrdqmwsrpnaycng
dycsflnkesnkcldvsgdqgtgdvgtwqcdglpdqrfkwvfddwevptatwnmvgcdqn
gkvsqqisntisfsstvtagvavevsstiekgvifakatvsvkvtaslskawtnsqsgtt
aitytcdnydsdeeftrgcmwqlaiettevksgdllvwnpqivkctrsntapgcapftkc
anedctfctdi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2z48B (B:)
evlctnpldigelrsfkskqcvdivgnqgsgniatydcdglsdqqiiicgdgtirnearn
ycftpdgsgnanvmsspctlypeipssqrwrqgrrktftdnggieqvateiinlasgkcl
diegsdgtgdigvydcqnlddqyfyvrsrgpelfygrlrneksdlcldvegsdgkgnvlm
yscednldqwfryyengeivnaksgmcldvegsdgsgnvgiyrcddlrdqmwsrpnaycn
gdycsflnkesnkcldvsgdqgtgdvgtwqcdglpdqrfkwvfddwevptatwnmvgcdq
ngkvsqqisntisfsstvtagvavevsstiekgvifakatvsvkvtaslskawtnsqsgt
taitytcdnydsdeeftrgcmwqlaiettevksgdllvwnpqivkctrsntapgcapftk
canedctfctdi

    Sequence, based on observed residues (ATOM records): (download) 
    >2z48B (B:)
vlctnpldigelrsfkskqcvdivgnqgsgniatydcdglsdqqiiicgdgtirnearny
cftpdgsgnanvmsspctlypeipssqrwrqgrrktftdnggieqvateiinlasgkcld
iegsdgtgdigvydcqnlddqyfyvrsrgpelfygrlrneksdlcldvegsdgkgnvlmy
scednldqwfryyengeivnaksgmcldvegsdgsgnvgiyrcddlrdqmwsrpnaycng
dycsflnkesnkcldvsgdqgtgdvgtwqcdglpdqrfkwvfddwevptatwnmvgcdqn
gkvsqqisntisfsstvtagvavevsstiekgvifakatvsvkvtaslskawtnsqsgtt
aitytcdnydsdeeftrgcmwqlaiettevksgdllvwnpqivkctrsntapgcapftkc
anedctfctdi