PDB entry 2ytz

View 2ytz on RCSB PDB site
Description: Complex structure of Trm1 from Pyrococcus horikoshii with S-adenosyl-L-Homocystein in the orthorhombic crystal-lattice
Class: transferase
Keywords: tRNA modification enzyme, guanine-26,N(2)-N(2)-dimethyltransferase, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI
Deposited on 2007-04-05, released 2007-10-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: 0.19
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: N(2),N(2)-dimethylguanosine tRNA methyltransferase
    Species: Pyrococcus horikoshii [TaxId:53953]
    Gene: trm1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ytza_
  • Chain 'B':
    Compound: N(2),N(2)-dimethylguanosine tRNA methyltransferase
    Species: Pyrococcus horikoshii [TaxId:53953]
    Gene: trm1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2ytzb_
  • Heterogens: SO4, SAH, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2ytzA (A:)
melievqegkakilipkaesiydspvfynprmalnrdivvvllnilnpkivldalsatgi
rgirfaletpaeevwlndisedayelmkrnvmlnfdgelreskgrailkgektivinhdd
anrlmaerhryfhfidldpfgspmefldtalrsakrrgilgvtatdgaplcgahpraclr
kylavplrgelchevgtrilvgviaryaakydlgidvilayykdhyfrafvklkdgarkg
detleklgyiyfddktgkfeleqgflptrpnaygpvwlgplkdekivskmvkeaeslsla
rkkqalkllkmidqeldiplfydthaigrrlkietkkveeiisalreqgyeatrthfspt
giktsapyevfietikri

    Sequence, based on observed residues (ATOM records): (download) 
    >2ytzA (A:)
elievqegkakilipkaesiydspvfynprmalnrdivvvllnilnpkivldalsatgir
girfaletpaeevwlndisedayelmkrnvmlnfdgelreskgrailkgektivinhdda
nrlmaerhryfhfidldpfgspmefldtalrsakrrgilgvtatdgaplcgahpraclrk
ylavplrgelchevgtrilvgviaryaakydlgidvilayykdhyfrafvklkdgarkgd
etleklgyiyfddktgkfeleqgflptrpnaygpvwlgplkdekivskmvkeaeslslar
kkqalkllkmidqeldiplfydthaigrrkkveeiisalreqgyeatrthfsptgiktsa
pyevfietikr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2ytzB (B:)
melievqegkakilipkaesiydspvfynprmalnrdivvvllnilnpkivldalsatgi
rgirfaletpaeevwlndisedayelmkrnvmlnfdgelreskgrailkgektivinhdd
anrlmaerhryfhfidldpfgspmefldtalrsakrrgilgvtatdgaplcgahpraclr
kylavplrgelchevgtrilvgviaryaakydlgidvilayykdhyfrafvklkdgarkg
detleklgyiyfddktgkfeleqgflptrpnaygpvwlgplkdekivskmvkeaeslsla
rkkqalkllkmidqeldiplfydthaigrrlkietkkveeiisalreqgyeatrthfspt
giktsapyevfietikri

    Sequence, based on observed residues (ATOM records): (download) 
    >2ytzB (B:)
lievqegkakilipdspvfynprmalnrdivvvllnilnpkivldalsatgirgirfale
tpaeevwlndisedayelmkrnvmlnfdgelreskgrailkgektivinhddanrlmaer
hryfhfidldpfgspmefldtalrsakrrgilgvtatdgaplcgahpraclrkylavplr
gelchevgtrilvgviaryaakydlgidvilayykdhyfrafvklkdgarkgdetleklg
yiyfddktgkfeleqgflptrpnaygpvwlgplkdekivskmvkeaeslslarkkqalkl
lkmidqeldiplfydthaigrretkkveeiisalreqgyeatrthfsptgiktsapyevf
ietik