PDB entry 2yjy
View 2yjy on RCSB PDB site
Description: a specific and modular binding code for cytosine recognition in puf domains
Class: RNA binding protein/RNA
Keywords: RNA binding protein-RNA complex, nanos response element
Deposited on
2011-05-24, released
2011-06-08
The last revision prior to the SCOPe 2.03 freeze date was dated
2011-08-03, with a file datestamp of
2011-07-29.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.2153
AEROSPACI score: 0.28
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Pumilio homolog 1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot Q14671 (1-End)
- engineered mutation (216)
- engineered mutation (220)
Domains in SCOPe 2.03: d2yjya_ - Chain 'B':
Compound: Pumilio homolog 1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot Q14671 (1-End)
- engineered mutation (216)
- engineered mutation (220)
Domains in SCOPe 2.03: d2yjyb_ - Chain 'C':
Compound: 5'-r(*ap*up*up*gp*cp*ap*up*ap*up*ap)-3'
Species: UNCLASSIFIED, synthetic [TaxId:32644]
- Chain 'D':
Compound: 5'-r(*ap*up*up*gp*cp*ap*up*ap*up*ap)-3'
Species: UNCLASSIFIED, synthetic [TaxId:32644]
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2yjyA (A:)
mgrsrlledfrnnrypnlqlreiaghimefsqdqhgsrfiqlkleratpaerqlvfneil
qaayqlmvdvfgnyviqkffefgsleqklalaerirghvlslalqmygcrviqkalefip
sdqqnemvreldghvlkcvkdqngnhvvqkciecvqpqslqfiidafkgqvfalsthpyg
crviqrilehclpdqtlpileelhqhteqlvqdqygsyvirhvlehgrpedkskivaeir
gnvlvlsqhkfasnvvekcvthasrteravlidevctmndgphsalytmmkdqyanyvvq
kmidvaepgqrkivmhkirphiatlrkytygkhilaklekyymkngvdlg
Sequence, based on observed residues (ATOM records): (download)
>2yjyA (A:)
grsrlledfrnnrypnlqlreiaghimefsqdqhgsrfiqlkleratpaerqlvfneilq
aayqlmvdvfgnyviqkffefgsleqklalaerirghvlslalqmygcrviqkalefips
dqqnemvreldghvlkcvkdqngnhvvqkciecvqpqslqfiidafkgqvfalsthpygc
rviqrilehclpdqtlpileelhqhteqlvqdqygsyvirhvlehgrpedkskivaeirg
nvlvlsqhkfasnvvekcvthasrteravlidevctmndgphsalytmmkdqyanyvvqk
midvaepgqrkivmhkirphiatlrkytygkhilakl
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2yjyB (B:)
mgrsrlledfrnnrypnlqlreiaghimefsqdqhgsrfiqlkleratpaerqlvfneil
qaayqlmvdvfgnyviqkffefgsleqklalaerirghvlslalqmygcrviqkalefip
sdqqnemvreldghvlkcvkdqngnhvvqkciecvqpqslqfiidafkgqvfalsthpyg
crviqrilehclpdqtlpileelhqhteqlvqdqygsyvirhvlehgrpedkskivaeir
gnvlvlsqhkfasnvvekcvthasrteravlidevctmndgphsalytmmkdqyanyvvq
kmidvaepgqrkivmhkirphiatlrkytygkhilaklekyymkngvdlg
Sequence, based on observed residues (ATOM records): (download)
>2yjyB (B:)
grsrlledfrnnrypnlqlreiaghimefsqdqhgsrfiqlkleratpaerqlvfneilq
aayqlmvdvfgnyviqkffefgsleqklalaerirghvlslalqmygcrviqkalefips
dqqnemvreldghvlkcvkdqngnhvvqkciecvqpqslqfiidafkgqvfalsthpygc
rviqrilehclpdqtlpileelhqhteqlvqdqygsyvirhvlehgrpedkskivaeirg
nvlvlsqhkfasnvvekcvthasrteravlidevctmndgphsalytmmkdqyanyvvqk
midvaepgqrkivmhkirphiatlrkytygkhilaklekyy
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.