PDB entry 2xgy

View 2xgy on RCSB PDB site
Description: complex of rabbit endogenous lentivirus (relik)capsid with cyclophilin a
Class: viral protein/isomerase
Keywords: viral protein-isomerase complex, retroviral capsid, endogenous
Deposited on 2010-06-08, released 2010-09-22
The last revision prior to the SCOPe 2.04 freeze date was dated 2010-09-22, with a file datestamp of 2010-09-17.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.1574
AEROSPACI score: 0.55 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: relik capsid n-terminal domain
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 2XGY
    Domains in SCOPe 2.04: d2xgya_
  • Chain 'B':
    Compound: Peptidyl-prolyl cis-trans isomerase A
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d2xgyb_
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2xgyA (A:)
pimlrggrqeyepvgpgliaawlkqvqehglthpatityfgvisinftsvdinmllnvtp
gfaaekqlvidkikekaiawdemhppppadaagpvpltsdqirgiglspeeaagprfada
rtlyrtwvlealqecqrtisplehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >2xgyA (A:)
pimeyepvgpgliaawlkqvqehglthpatityfgvisinftsvdinmllnvtpgaekql
vidkikekaiawdemhppppadaagpvpltsdqirgiglspeeaagprfadartlyrtwv
lealqecqr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2xgyB (B:)
gplgspefmvnptvffdiavdgeplgrvsfelfadkvpktaenfralstgekgfgykgsc
fhriipgfmcqggdftrhngtggksiygekfedenfilkhtgpgilsmanagpntngsqf
fictaktewldgkhvvfgkvkegmniveamerfgsrngktskkitiadcgqle

    Sequence, based on observed residues (ATOM records): (download) 
    >2xgyB (B:)
mvnptvffdiavdgeplgrvsfelfadkvpktaenfralstgekgfgykgscfhriipgf
mcqggdftrhngtggksiygekfedenfilkhtgpgilsmanagpntngsqffictakte
wldgkhvvfgkvkegmniveamerfgsrngktskkitiadcgqle