PDB entry 2wbv

View 2wbv on RCSB PDB site
Description: Canine adenovirus 2 fibre head in complex with sialic acid
Class: structural protein
Keywords: knob, head, fiber, virus, fibre, adenovirus, hemagglutination, structural protein, red blood cell, sialyl-lactose, cell attachment, erythrocyte, sialic acid, fiber protein
Deposited on 2009-03-05, released 2009-03-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: fiber protein
    Species: CANINE ADENOVIRUS 2 [TaxId:10514]
    Database cross-references and differences (RAF-indexed):
    • PDB 2WBV
    • Uniprot Q65914 (Start-188)
    Domains in SCOPe 2.08: d2wbva_
  • Chain 'B':
    Compound: fiber protein
    Species: CANINE ADENOVIRUS 2 [TaxId:10514]
    Database cross-references and differences (RAF-indexed):
    • PDB 2WBV (Start-3)
    • Uniprot Q65914 (4-188)
    Domains in SCOPe 2.08: d2wbvb_
  • Chain 'C':
    Compound: fiber protein
    Species: CANINE ADENOVIRUS 2 [TaxId:10514]
    Database cross-references and differences (RAF-indexed):
    • PDB 2WBV
    • Uniprot Q65914 (Start-188)
    Domains in SCOPe 2.08: d2wbvc_
  • Chain 'D':
    Compound: fiber protein
    Species: CANINE ADENOVIRUS 2 [TaxId:10514]
    Database cross-references and differences (RAF-indexed):
    • PDB 2WBV
    • Uniprot Q65914 (Start-188)
    Domains in SCOPe 2.08: d2wbvd_
  • Chain 'E':
    Compound: fiber protein
    Species: CANINE ADENOVIRUS 2 [TaxId:10514]
    Database cross-references and differences (RAF-indexed):
    • PDB 2WBV
    • Uniprot Q65914 (Start-188)
    Domains in SCOPe 2.08: d2wbve_
  • Chain 'F':
    Compound: fiber protein
    Species: CANINE ADENOVIRUS 2 [TaxId:10514]
    Database cross-references and differences (RAF-indexed):
    • PDB 2WBV
    • Uniprot Q65914 (Start-188)
    Domains in SCOPe 2.08: d2wbvf_
  • Heterogens: GOL, SIA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2wbvA (A:)
gamsppaapitlwtgpgpsingfindtpvircficltrdsnlvtvnasfvgeggyrivsp
tqsqfslimefdqfgqlmstgninstttwgekpwgnntvqprpshtwklcmpnrevystp
aatisrcgldsiavdgapsrsidcmliinkpkgvatytltfrflnfnrlsggtlfktdvl
tftyvgenq

    Sequence, based on observed residues (ATOM records): (download) 
    >2wbvA (A:)
aapitlwtgpgpsingfindtpvircficltrdsnlvtvnasfvgeggyrivsptqsqfs
limefdqfgqlmstgninstttwgekpwgnntvqprpshtwklcmpnrevystpaatisr
cgldsiavdgapsrsidcmliinkpkgvatytltfrflnfnrlsggtlfktdvltftyvg
enq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2wbvB (B:)
gamsppaapitlwtgpgpsingfindtpvircficltrdsnlvtvnasfvgeggyrivsp
tqsqfslimefdqfgqlmstgninstttwgekpwgnntvqprpshtwklcmpnrevystp
aatisrcgldsiavdgapsrsidcmliinkpkgvatytltfrflnfnrlsggtlfktdvl
tftyvgenq

    Sequence, based on observed residues (ATOM records): (download) 
    >2wbvB (B:)
sppaapitlwtgpgpsingfindtpvircficltrdsnlvtvnasfvgeggyrivsptqs
qfslimefdqfgqlmstgninstttwgekpwgnntvqprpshtwklcmpnrevystpaat
isrcgldsiavdgapsrsidcmliinkpkgvatytltfrflnfnrlsggtlfktdvltft
yvgenq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2wbvC (C:)
gamsppaapitlwtgpgpsingfindtpvircficltrdsnlvtvnasfvgeggyrivsp
tqsqfslimefdqfgqlmstgninstttwgekpwgnntvqprpshtwklcmpnrevystp
aatisrcgldsiavdgapsrsidcmliinkpkgvatytltfrflnfnrlsggtlfktdvl
tftyvgenq

    Sequence, based on observed residues (ATOM records): (download) 
    >2wbvC (C:)
aapitlwtgpgpsingfindtpvircficltrdsnlvtvnasfvgeggyrivsptqsqfs
limefdqfgqlmstgninstttwgekpwgnntvqprpshtwklcmpnrevystpaatisr
cgldsiavdgapsrsidcmliinkpkgvatytltfrflnfnrlsggtlfktdvltftyvg
enq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2wbvD (D:)
gamsppaapitlwtgpgpsingfindtpvircficltrdsnlvtvnasfvgeggyrivsp
tqsqfslimefdqfgqlmstgninstttwgekpwgnntvqprpshtwklcmpnrevystp
aatisrcgldsiavdgapsrsidcmliinkpkgvatytltfrflnfnrlsggtlfktdvl
tftyvgenq

    Sequence, based on observed residues (ATOM records): (download) 
    >2wbvD (D:)
paapitlwtgpgpsingfindtpvircficltrdsnlvtvnasfvgeggyrivsptqsqf
slimefdqfgqlmstgninstttwgekpwgnntvqprpshtwklcmpnrevystpaatis
rcgldsiavdgapsrsidcmliinkpkgvatytltfrflnfnrlsggtlfktdvltftyv
genq

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2wbvE (E:)
gamsppaapitlwtgpgpsingfindtpvircficltrdsnlvtvnasfvgeggyrivsp
tqsqfslimefdqfgqlmstgninstttwgekpwgnntvqprpshtwklcmpnrevystp
aatisrcgldsiavdgapsrsidcmliinkpkgvatytltfrflnfnrlsggtlfktdvl
tftyvgenq

    Sequence, based on observed residues (ATOM records): (download) 
    >2wbvE (E:)
apitlwtgpgpsingfindtpvircficltrdsnlvtvnasfvgeggyrivsptqsqfsl
imefdqfgqlmstgninstttwgekpwgnntvqprpshtwklcmpnrevystpaatisrc
gldsiavdgapsrsidcmliinkpkgvatytltfrflnfnrlsggtlfktdvltftyvge
nq

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2wbvF (F:)
gamsppaapitlwtgpgpsingfindtpvircficltrdsnlvtvnasfvgeggyrivsp
tqsqfslimefdqfgqlmstgninstttwgekpwgnntvqprpshtwklcmpnrevystp
aatisrcgldsiavdgapsrsidcmliinkpkgvatytltfrflnfnrlsggtlfktdvl
tftyvgenq

    Sequence, based on observed residues (ATOM records): (download) 
    >2wbvF (F:)
paapitlwtgpgpsingfindtpvircficltrdsnlvtvnasfvgeggyrivsptqsqf
slimefdqfgqlmstgninstttwgekpwgnntvqprpshtwklcmpnrevystpaatis
rcgldsiavdgapsrsidcmliinkpkgvatytltfrflnfnrlsggtlfktdvltftyv
genq