PDB entry 2vub

View 2vub on RCSB PDB site
Description: ccdb, a topoisomerase poison from e. coli
Class: ccdb
Keywords: ccdb, topoisomerase poison, plasmid
Deposited on 1998-04-21, released 1998-06-17
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: 0.205
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ccdb
    Species: Escherichia coli [TaxId:562]
    Gene: CCDB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2vuba_
  • Chain 'B':
    Compound: ccdb
    Species: Escherichia coli [TaxId:562]
    Gene: CCDB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2vubb_
  • Chain 'C':
    Compound: ccdb
    Species: Escherichia coli [TaxId:562]
    Gene: CCDB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2vubc_
  • Chain 'D':
    Compound: ccdb
    Species: Escherichia coli [TaxId:562]
    Gene: CCDB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2vubd_
  • Chain 'E':
    Compound: ccdb
    Species: Escherichia coli [TaxId:562]
    Gene: CCDB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2vube_
  • Chain 'F':
    Compound: ccdb
    Species: Escherichia coli [TaxId:562]
    Gene: CCDB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2vubf_
  • Chain 'G':
    Compound: ccdb
    Species: Escherichia coli [TaxId:562]
    Gene: CCDB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2vubg_
  • Chain 'H':
    Compound: ccdb
    Species: Escherichia coli [TaxId:562]
    Gene: CCDB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2vubh_
  • Heterogens: CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2vubA (A:)
mqfkvytykresryrlfvdvqsdiidtpgrrmviplasarllsdkvsrelypvvhigdes
wrmmttdmasvpvsvigeevadlshrendiknainlmfwgi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2vubB (B:)
mqfkvytykresryrlfvdvqsdiidtpgrrmviplasarllsdkvsrelypvvhigdes
wrmmttdmasvpvsvigeevadlshrendiknainlmfwgi

    Sequence, based on observed residues (ATOM records): (download) 
    >2vubB (B:)
mqfkvytyyrlfvdvqsdiidtpgrrmviplasarllsdkvsrelypvvhigdeswrmmt
tdmasvpvsvigeevadlshrendiknainlmfwgi

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2vubC (C:)
mqfkvytykresryrlfvdvqsdiidtpgrrmviplasarllsdkvsrelypvvhigdes
wrmmttdmasvpvsvigeevadlshrendiknainlmfwgi

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2vubD (D:)
mqfkvytykresryrlfvdvqsdiidtpgrrmviplasarllsdkvsrelypvvhigdes
wrmmttdmasvpvsvigeevadlshrendiknainlmfwgi

    Sequence, based on observed residues (ATOM records): (download) 
    >2vubD (D:)
mqfkvytyyrlfvdvqsdiidtpgrrmviplasarllsdkvsrelypvvhigdeswrmmt
tdmasvpvsvigeevadlshrendiknainlmfwgi

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2vubE (E:)
mqfkvytykresryrlfvdvqsdiidtpgrrmviplasarllsdkvsrelypvvhigdes
wrmmttdmasvpvsvigeevadlshrendiknainlmfwgi

    Sequence, based on observed residues (ATOM records): (download) 
    >2vubE (E:)
mqfkvytyyrlfvdvqsdiidtpgrrmviplasarllsdkvsrelypvvhigdeswrmmt
tdmasvpvsvigeevadlshrendiknainlmfwgi

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2vubF (F:)
mqfkvytykresryrlfvdvqsdiidtpgrrmviplasarllsdkvsrelypvvhigdes
wrmmttdmasvpvsvigeevadlshrendiknainlmfwgi

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2vubG (G:)
mqfkvytykresryrlfvdvqsdiidtpgrrmviplasarllsdkvsrelypvvhigdes
wrmmttdmasvpvsvigeevadlshrendiknainlmfwgi

    Sequence, based on observed residues (ATOM records): (download) 
    >2vubG (G:)
mqfkvytyyrlfvdvqsdiidtpgrrmviplasarllsdkvsrelypvvhigdeswrmmt
tdmasvpvsvigeevadlshrendiknainlmfwgi

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2vubH (H:)
mqfkvytykresryrlfvdvqsdiidtpgrrmviplasarllsdkvsrelypvvhigdes
wrmmttdmasvpvsvigeevadlshrendiknainlmfwgi