PDB entry 2vl9
View 2vl9 on RCSB PDB site
Description: oxidized form of human peroxiredoxin 5
Class: oxidoreductase
Keywords: thioredoxin peroxidase, alternative initiation, antioxidant enzyme, redox-active center, cytoplasm, peroxidase, peroxisome, antioxidant, polymorphism, mitochondrion, peroxiredoxin, oxidoreductase, transit peptide, thioredoxin fold
Deposited on
2008-01-11, released
2008-08-26
The last revision prior to the SCOPe 2.02 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-13.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.1863
AEROSPACI score: 0.2
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: peroxiredoxin-5
Species: HOMO SAPIENS [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 2VL9
- Uniprot P30044 (12-172)
Domains in SCOPe 2.02: d2vl9a_ - Chain 'B':
Compound: peroxiredoxin-5
Species: HOMO SAPIENS [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 2VL9
- Uniprot P30044 (12-172)
Domains in SCOPe 2.02: d2vl9b_ - Chain 'C':
Compound: peroxiredoxin-5
Species: HOMO SAPIENS [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 2VL9
- Uniprot P30044 (12-172)
Domains in SCOPe 2.02: d2vl9c_ - Chain 'D':
Compound: peroxiredoxin-5
Species: HOMO SAPIENS [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 2VL9
- Uniprot P30044 (12-172)
Domains in SCOPe 2.02: d2vl9d_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2vl9A (A:)
mrgshhhhhhgsapikvgdaipavevfegepgnkvnlaelfkgkkgvlfgvpgaftpgcs
kthlpgfveqaealkakgvqvvaslsvndafvtgewgrahkaegkvrlladptgafgket
dlllddslvsifgnrrlkrfsmvvqdgivkalnvepdgtgltcslapniisql
Sequence, based on observed residues (ATOM records): (download)
>2vl9A (A:)
apikvgdaipavevfegepgnkvnlaelfkgkkgvlfgvpgaftpgcskthlpgfveqae
alkakgvqvvaslsvndafvtgewgrahkaegkvrlladptgafgketdlllddslvsif
gnrrlkrfsmvvqdgivkalnvepdgtgltcslapniisql
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2vl9B (B:)
mrgshhhhhhgsapikvgdaipavevfegepgnkvnlaelfkgkkgvlfgvpgaftpgcs
kthlpgfveqaealkakgvqvvaslsvndafvtgewgrahkaegkvrlladptgafgket
dlllddslvsifgnrrlkrfsmvvqdgivkalnvepdgtgltcslapniisql
Sequence, based on observed residues (ATOM records): (download)
>2vl9B (B:)
apikvgdaipavevfegepgnkvnlaelfkgkkgvlfgvpgaftpgcskthlpgfveqae
alkakgvqvvaslsvndafvtgewgrahkaegkvrlladptgafgketdlllddslvsif
gnrrlkrfsmvvqdgivkalnvepdgtgltcslapniisql
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2vl9C (C:)
mrgshhhhhhgsapikvgdaipavevfegepgnkvnlaelfkgkkgvlfgvpgaftpgcs
kthlpgfveqaealkakgvqvvaslsvndafvtgewgrahkaegkvrlladptgafgket
dlllddslvsifgnrrlkrfsmvvqdgivkalnvepdgtgltcslapniisql
Sequence, based on observed residues (ATOM records): (download)
>2vl9C (C:)
apikvgdaipavevfegepgnkvnlaelfkgkkgvlfgvpgaftpgcskthlpgfveqae
alkakgvqvvaslsvndafvtgewgrahkaegkvrlladptgafgketdlllddslvsif
gnrrlkrfsmvvqdgivkalnvepdgtgltcslapniisql
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2vl9D (D:)
mrgshhhhhhgsapikvgdaipavevfegepgnkvnlaelfkgkkgvlfgvpgaftpgcs
kthlpgfveqaealkakgvqvvaslsvndafvtgewgrahkaegkvrlladptgafgket
dlllddslvsifgnrrlkrfsmvvqdgivkalnvepdgtgltcslapniisql
Sequence, based on observed residues (ATOM records): (download)
>2vl9D (D:)
apikvgdaipavevfegepgnkvnlaelfkgkkgvlfgvpgaftpgcskthlpgfveqae
alkakgvqvvaslsvndafvtgewgrahkaegkvrlladptgafgketdlllddslvsif
gnrrlkrfsmvvqdgivkalnvepdgtgltcslapniisql