PDB entry 2qqn
View 2qqn on RCSB PDB site
Description: Neuropilin-1 b1 Domain in Complex with a VEGF-Blocking Fab
Class: signaling protein
Keywords: VEGF receptor, semaphorin receptor, Phage-Derived Antibody, Angiogenesis, Developmental protein, Differentiation, Glycoprotein, Heparan sulfate, Membrane, Neurogenesis, Proteoglycan, Secreted, Transmembrane, HORMONE, SIGNALING PROTEIN
Deposited on
2007-07-26, released
2007-11-20
The last revision prior to the SCOPe 2.07 freeze date was dated
2017-10-25, with a file datestamp of
2017-10-20.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.26
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Neuropilin-1
Species: Homo sapiens [TaxId:9606]
Gene: NRP1, NRP, VEGF165R
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d2qqna_ - Chain 'H':
Compound: antibody heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d2qqnh1, d2qqnh2 - Chain 'L':
Compound: Antibody Light Chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d2qqnl1, d2qqnl2 - Heterogens: EDO, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2qqnA (A:)
gshmfkcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqv
dlgllrfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnpt
dvvvavfpkplitrfvrikpatwetgismrfevygckit
Sequence, based on observed residues (ATOM records): (download)
>2qqnA (A:)
kcmealgmesgeihsdqitassqystnwsaersrlnypengwtpgedsyrewiqvdlgll
rfvtavgtqgaisketkkkyyvktykidvssngedwitikegnkpvlfqgntnptdvvva
vfpkplitrfvrikpatwetgismrfevygckit
- Chain 'H':
Sequence, based on SEQRES records: (download)
>2qqnH (H:)
evqlvesggglvqpggslrlscaasgftfssyamswvrqapgkglewvsqispaggytny
adsvkgrftisadtskntaylqmnslraedtavyycargelpyyrmskvmdvwgqgtlvt
vssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavl
qssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdkth
Sequence, based on observed residues (ATOM records): (download)
>2qqnH (H:)
evqlvesggglvqpggslrlscaasgftfssyamswvrqapgkglewvsqispaggytny
adsvkgrftisadtskntaylqmnslraedtavyycargelpyyrmskvmdvwgqgtlvt
vssastkgpsvfplapssggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssg
lyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscdkth
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>2qqnL (L:)
diqmtqspsslsasvgdrvtitcrasqyfssylawyqqkpgkapklliygassrasgvps
rfsgsgsgtdftltisslqpedfatyycqqylgspptfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgec