PDB entry 2qqd

View 2qqd on RCSB PDB site
Description: N47A mutant of Pyruvoyl-dependent Arginine Decarboxylase from Methanococcus jannashii
Class: lyase
Keywords: arginine decarboxylase, pyruvoyl, decarboxylation, autoprocessing, serinolysis, Lyase, Pyruvate
Deposited on 2007-07-26, released 2008-03-18
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.212
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pyruvoyl-dependent arginine decarboxylase (EC 4.1.1.19) (PvlArgDC)
    Species: Methanocaldococcus jannaschii [TaxId:2190]
    Gene: pdaD
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q57764 (Start-52)
      • engineered (47)
  • Chain 'B':
    Compound: Pyruvoyl-dependent arginine decarboxylase (EC 4.1.1.19) (PvlArgDC)
    Species: Methanocaldococcus jannaschii [TaxId:2190]
    Gene: pdaD
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Pyruvoyl-dependent arginine decarboxylase (EC 4.1.1.19) (PvlArgDC)
    Species: Methanocaldococcus jannaschii [TaxId:2190]
    Gene: pdaD
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q57764 (Start-165)
      • engineered (47)
    Domains in SCOPe 2.06: d2qqdc_
  • Chain 'D':
    Compound: Pyruvoyl-dependent arginine decarboxylase (EC 4.1.1.19) (PvlArgDC)
    Species: Methanocaldococcus jannaschii [TaxId:2190]
    Gene: pdaD
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q57764 (Start-52)
      • engineered (47)
  • Chain 'E':
    Compound: Pyruvoyl-dependent arginine decarboxylase (EC 4.1.1.19) (PvlArgDC)
    Species: Methanocaldococcus jannaschii [TaxId:2190]
    Gene: pdaD
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Pyruvoyl-dependent arginine decarboxylase (EC 4.1.1.19) (PvlArgDC)
    Species: Methanocaldococcus jannaschii [TaxId:2190]
    Gene: pdaD
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q57764 (Start-165)
      • engineered (47)
    Domains in SCOPe 2.06: d2qqdf_
  • Chain 'G':
    Compound: Pyruvoyl-dependent arginine decarboxylase (EC 4.1.1.19) (PvlArgDC)
    Species: Methanocaldococcus jannaschii [TaxId:2190]
    Gene: pdaD
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q57764 (Start-165)
      • engineered (47)
    Domains in SCOPe 2.06: d2qqdg_
  • Chain 'H':
    Compound: Pyruvoyl-dependent arginine decarboxylase (EC 4.1.1.19) (PvlArgDC)
    Species: Methanocaldococcus jannaschii [TaxId:2190]
    Gene: pdaD
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q57764 (Start-165)
      • engineered (47)
    Domains in SCOPe 2.06: d2qqdh_
  • Heterogens: AG2, PYR, MPD, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2qqdC (C:)
hmnaeinplhayfklpntvslvagssegetplnafdgallnagignvalirissimppea
eivplpklpmgalvptaygyiisdvpgetisaaisvaipkdkslcglimeyegkcskkea
ektvremakigfemrgweldriesiavehtveklgcafaaaalwyk

    Sequence, based on observed residues (ATOM records): (download) 
    >2qqdC (C:)
plhayfklpntvslvagssegetplnafdgallnagignvalirissimppeaeivplpk
lpmgalvptaygyiisdvpgetisaaisvaipkdkslcglimeyegkcskkeaektvrem
akigfemrgweldriesiavehtveklgcafaaaalwyk

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >2qqdF (F:)
hmnaeinplhayfklpntvslvagssegetplnafdgallnagignvalirissimppea
eivplpklpmgalvptaygyiisdvpgetisaaisvaipkdkslcglimeyegkcskkea
ektvremakigfemrgweldriesiavehtveklgcafaaaalwyk

    Sequence, based on observed residues (ATOM records): (download) 
    >2qqdF (F:)
lpntvslvagssegetplnafdgallnagignvalirissimppeaeivplpklpmgalv
ptaygyiisdvpgetisaaisvaipkdkslcglimeyegkcskkeaektvremakigfem
rgweldriesiavehtveklgcafaaaalwyk

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >2qqdG (G:)
hmnaeinplhayfklpntvslvagssegetplnafdgallnagignvalirissimppea
eivplpklpmgalvptaygyiisdvpgetisaaisvaipkdkslcglimeyegkcskkea
ektvremakigfemrgweldriesiavehtveklgcafaaaalwyk

    Sequence, based on observed residues (ATOM records): (download) 
    >2qqdG (G:)
lpntvslvagssegetplnafdgallnagignvalirissimppeaeivplpklpmgalv
ptaygyiisdvpgetisaaisvaipkdkslcglimeyegkcskkeaektvremakigfem
rgweldriesiavehtveklgcafaaaalwyk

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >2qqdH (H:)
hmnaeinplhayfklpntvslvagssegetplnafdgallnagignvalirissimppea
eivplpklpmgalvptaygyiisdvpgetisaaisvaipkdkslcglimeyegkcskkea
ektvremakigfemrgweldriesiavehtveklgcafaaaalwyk

    Sequence, based on observed residues (ATOM records): (download) 
    >2qqdH (H:)
klpntvslvagssegetplnafdgallnagignvalirissimppeaeivplpklpmgal
vptaygyiisdvpgetisaaisvaipkdkslcglimeyegkcskkeaektvremakigfe
mrgweldriesiavehtveklgcafaaaalwyk