PDB entry 2q3u

View 2q3u on RCSB PDB site
Description: Ensemble refinement of the protein crystal structure of gene product from Arabidopsis thaliana At5g08170, agmatine iminohydrolase
Class: hydrolase
Keywords: Ensemble Refinement, Refinement Methodology Development, At5g08170, POLYAMINE BIOSYNTHESIS, AGMATINE IMINOHYDROLASE, AIH, AGMATINE DEIMINASE, N-CARBAMOYLPUTRESCINE, PUTRESCINE, Structural Genomics, Protein Structure Initiative, PSI, Center for Eukaryotic Structural Genomics, CESG
Deposited on 2007-05-30, released 2007-06-19
The last revision prior to the SCOP 1.73 freeze date was dated 2007-06-19, with a file datestamp of 2007-06-15.
Experiment type: XRAY
Resolution: 1.53 Å
R-factor: 0.135
AEROSPACI score: 0.65 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: agmatine deiminase
    Species: Arabidopsis thaliana
    Gene: AIH, At5g08170, T22D6.110
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8GWW7
      • modified residue (14)
      • variant (48)
      • modified residue (84)
      • modified residue (86)
      • modified residue (158)
      • modified residue (189)
      • modified residue (227)
      • modified residue (283)
    Domains in SCOP 1.73: d2q3ua1
  • Chain 'B':
    Compound: agmatine deiminase
    Species: Arabidopsis thaliana
    Gene: AIH, At5g08170, T22D6.110
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8GWW7
      • modified residue (14)
      • variant (48)
      • modified residue (84)
      • modified residue (86)
      • modified residue (158)
      • modified residue (189)
      • modified residue (227)
      • modified residue (283)
    Domains in SCOP 1.73: d2q3ub1
  • Heterogens: MG, EDO, MPO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2q3uA (A:)
meesrespaehgyympaewdshaqtwigwperqdnwrhnalpaqrvfagvakaiskfepv
tvcaspaqwenarkqlpedirvvemsmndswfrdsgptfivrkrpvklsslnrniagidw
nfnawggandgcyndwshdllvsrkilaleriprfqhsmileggsihvdgegtclvteec
llnknrnphmskeqieeelkkylgvqsfiwlprglygdedtnghidnmccfarpgvvlls
wtddetdpqyersvealsvlsnsidargrkiqviklyipeplymteeessgitqdgeaip
rlagtrlaasyvnfyianggiiapqfgdpirdkeairvlsdtfphhsvvgienareivla
ggnihcitqqqpaeptsvaengh

    Sequence, based on observed residues (ATOM records): (download) 
    >2q3uA (A:)
respaehgyympaewdshaqtwigwperqdnwrhnalpaqrvfagvakaiskfepvtvca
spaqwenarkqlpedirvvemsmndswfrdsgptfivrkrnrniagidwnfnawggandg
cyndwshdllvsrkilaleriprfqhsmileggsihvdgegtclvteecllnknrnphms
keqieeelkkylgvqsfiwlprglygdedtnghidnmccfarpgvvllswtddetdpqye
rsvealsvlsnsidargrkiqviklyipeplymteeessgitqdgeaiprlagtrlaasy
vnfyianggiiapqfgdpirdkeairvlsdtfphhsvvgienareivlaggnihcitqqq
paept

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2q3uB (B:)
meesrespaehgyympaewdshaqtwigwperqdnwrhnalpaqrvfagvakaiskfepv
tvcaspaqwenarkqlpedirvvemsmndswfrdsgptfivrkrpvklsslnrniagidw
nfnawggandgcyndwshdllvsrkilaleriprfqhsmileggsihvdgegtclvteec
llnknrnphmskeqieeelkkylgvqsfiwlprglygdedtnghidnmccfarpgvvlls
wtddetdpqyersvealsvlsnsidargrkiqviklyipeplymteeessgitqdgeaip
rlagtrlaasyvnfyianggiiapqfgdpirdkeairvlsdtfphhsvvgienareivla
ggnihcitqqqpaeptsvaengh

    Sequence, based on observed residues (ATOM records): (download) 
    >2q3uB (B:)
spaehgyympaewdshaqtwigwperqdnwrhnalpaqrvfagvakaiskfepvtvcasp
aqwenarkqlpedirvvemsmndswfrdsgptfivrkrnrniagidwnfnawggandgcy
ndwshdllvsrkilaleriprfqhsmileggsihvdgegtclvteecllnknrnphmske
qieeelkkylgvqsfiwlprglygdedtnghidnmccfarpgvvllswtddetdpqyers
vealsvlsnsidargrkiqviklyipeplymteeessgitqdgeaiprlagtrlaasyvn
fyianggiiapqfgdpirdkeairvlsdtfphhsvvgienareivlaggnihcitqqqpa
ept