SCOP 1.73: Domain d2q3ub1: 2q3u B:7-376

Lineage for d2q3ub1 (2q3u B:7-376)

1. Root: SCOP 1.73

2. Class d: Alpha and beta proteins (a+b) [53931] (334 folds)

3. Fold d.126: Pentein, beta/alpha-propeller [55908] (1 superfamily)
   duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis

4. Superfamily d.126.1: Pentein [55909] (7 families)

5. Family d.126.1.6: Porphyromonas-type peptidylarginine deiminase [111155] (2 proteins)
   Pfam PF04371; functionally related to the amidinotransferase, similar active site

6. Protein Agmatine iminohydrolase [111156] (2 species)

7. Species Thale-cress (Arabidopsis thaliana) [TaxId:3702] [111157] (2 PDB entries)

8. Domain d2q3ub1: 2q3u B:7-376 [139810]
   automatically matched to d1vkpa_
   complexed with edo, mg, mpo

Details for d2q3ub1

PDB Entry: 2q3u, 1.53 Å

PDB Description: Ensemble refinement of the protein crystal structure of gene product from Arabidopsis thaliana At5g08170, agmatine iminohydrolase

PDB Compounds: (B:) agmatine deiminase

SCOP Domain Sequences for d2q3ub1:

Sequence, based on SEQRES records:

>d2q3ub1 d.126.1.6 (B:7-376) Agmatine iminohydrolase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
spaehgyympaewdshaqtwigwperqdnwrhnalpaqrvfagvakaiskfepvtvcasp
aqwenarkqlpedirvvemsmndswfrdsgptfivrkrpvklsslnrniagidwnfnawg
gandgcyndwshdllvsrkilaleriprfqhsmileggsihvdgegtclvteecllnknr
nphmskeqieeelkkylgvqsfiwlprglygdedtnghidnmccfarpgvvllswtddet
dpqyersvealsvlsnsidargrkiqviklyipeplymteeessgitqdgeaiprlagtr
laasyvnfyianggiiapqfgdpirdkeairvlsdtfphhsvvgienareivlaggnihc
itqqqpaept

Sequence, based on observed residues (ATOM records):

>d2q3ub1 d.126.1.6 (B:7-376) Agmatine iminohydrolase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
spaehgyympaewdshaqtwigwperqdnwrhnalpaqrvfagvakaiskfepvtvcasp
aqwenarkqlpedirvvemsmndswfrdsgptfivrkrnrniagidwnfnawggandgcy
ndwshdllvsrkilaleriprfqhsmileggsihvdgegtclvteecllnknrnphmske
qieeelkkylgvqsfiwlprglygdedtnghidnmccfarpgvvllswtddetdpqyers
vealsvlsnsidargrkiqviklyipeplymteeessgitqdgeaiprlagtrlaasyvn
fyianggiiapqfgdpirdkeairvlsdtfphhsvvgienareivlaggnihcitqqqpa
ept

Timeline for d2q3ub1:

• d2q3ub1 is new in SCOP 1.73
  
• d2q3ub1 appears in SCOP 1.75
  
• d2q3ub1 appears in the current release, SCOPe 2.08, called d2q3ub_