PDB entry 2pyj

View 2pyj on RCSB PDB site
Description: Phi29 DNA polymerase complexed with primer-template DNA and incoming nucleotide substrates (ternary complex)
Class: replication, transferase/DNA
Keywords: protein-dna complex, REPLICATION, TRANSFERASE/DNA COMPLEX
Deposited on 2007-05-16, released 2007-07-17
The last revision prior to the SCOPe 2.01 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.03 Å
R-factor: 0.191
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase
    Species: BACILLUS PHAGE PHI29 [TaxId:10756]
    Gene: 2, gp2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03680 (Start-574)
      • engineered (11)
      • engineered (65)
    Domains in SCOPe 2.01: d2pyja1, d2pyja2
  • Chain 'B':
    Compound: DNA polymerase
    Species: BACILLUS PHAGE PHI29 [TaxId:10756]
    Gene: 2, gp2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03680 (Start-574)
      • engineered (11)
      • engineered (65)
    Domains in SCOPe 2.01: d2pyjb1, d2pyjb2
  • Chain 'J':
    Compound: 5'-d(GACTGCTTA(DOC)-3'
  • Chain 'K':
    Compound: 5'-d(ACACGTAAGCAGTC)-3'
  • Chain 'Q':
    Compound: 5'-d(GACTGCTTA(DOC)-3'
  • Chain 'R':
    Compound: 5'-d(ACACGTAAGCAGTC)-3'
  • Chain 'X':
    Compound: 5'-d(GACTGCTTA(DOC)-3'
  • Chain 'Y':
    Compound: 5'-d(ACACGTAAGCAGTC)-3'
  • Heterogens: MN, MG, DGT, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2pyjA (A:)
mkhmprkmyscafetttkvedcrvwaygymniedhseykignsldefmawvlkvqadlyf
hnlkfagafiinwlerngfkwsadglpntyntiisrmgqwymidiclgykgkrkihtviy
dslkklpfpvkkiakdfkltvlkgdidyhkerpvgykitpeeyayikndiqiiaealliq
fkqgldrmtagsdslkgfkdiittkkfkkvfptlslgldkevryayrggftwlndrfkek
eigegmvfdvnslypaqmysrllpygepivfegkyvwdedyplhiqhircefelkegyip
tiqikrsrfykgneylkssggeiadlwlsnvdlelmkehydlynveyisglkfkattglf
kdfidkwtyikttsegaikqlaklmlnslygkfasnpdvtgkvpylkengalgfrlgeee
tkdpvytpmgvfitawaryttitaaqacydriiycdtdsihltgteipdvikdivdpkkl
gywahestfkrakylrqktyiqdiymkevdgklvegspddytdikfsvkcagmtdkikke
vtfenfkvgfsrkmkpkpvqvpggvvlvddtftik

    Sequence, based on observed residues (ATOM records): (download) 
    >2pyjA (A:)
prkmyscafetttkvedcrvwaygymniedhseykignsldefmawvlkvqadlyfhnlk
fagafiinwlerngfkwsadglpntyntiisrmgqwymidiclgykgkrkihtviydslk
klpfpvkkiakdfkltvlkgdidyhkerpvgykitpeeyayikndiqiiaealliqfkqg
ldrmtagsdslkgfkdiittkkfkkvfptlslgldkevryayrggftwlndrfkekeige
gmvfdvnslypaqmysrllpygepivfegkyvwdedyplhiqhircefelkegyiptiqi
krsrfykgneylkssggeiadlwlsnvdlelmkehydlynveyisglkfkattglfkdfi
dkwtyikttsegaikqlaklmlnslygkfasnpdvtgkvpylkengalgfrlgeeetkdp
vytpmgvfitawaryttitaaqacydriiycdtdsihltgteipdvikdivdpkklgywa
hestfkrakylrqktyiqdiymkevvegspddytdikfsvkcagmtdkikkevtfenfkv
gfsrkmkpkpvqvpggvvlvddtftik

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2pyjB (B:)
mkhmprkmyscafetttkvedcrvwaygymniedhseykignsldefmawvlkvqadlyf
hnlkfagafiinwlerngfkwsadglpntyntiisrmgqwymidiclgykgkrkihtviy
dslkklpfpvkkiakdfkltvlkgdidyhkerpvgykitpeeyayikndiqiiaealliq
fkqgldrmtagsdslkgfkdiittkkfkkvfptlslgldkevryayrggftwlndrfkek
eigegmvfdvnslypaqmysrllpygepivfegkyvwdedyplhiqhircefelkegyip
tiqikrsrfykgneylkssggeiadlwlsnvdlelmkehydlynveyisglkfkattglf
kdfidkwtyikttsegaikqlaklmlnslygkfasnpdvtgkvpylkengalgfrlgeee
tkdpvytpmgvfitawaryttitaaqacydriiycdtdsihltgteipdvikdivdpkkl
gywahestfkrakylrqktyiqdiymkevdgklvegspddytdikfsvkcagmtdkikke
vtfenfkvgfsrkmkpkpvqvpggvvlvddtftik

    Sequence, based on observed residues (ATOM records): (download) 
    >2pyjB (B:)
hmprkmyscafetttkvedcrvwaygymniedhseykignsldefmawvlkvqadlyfhn
lkfagafiinwlerngfkwsadglpntyntiisrmgqwymidiclgykgkrkihtviyds
lkklpfpvkkiakdfkltvlkgdidyhkerpvgykitpeeyayikndiqiiaealliqfk
qgldrmtagsdslkgfkdiittkkfkkvfptlslgldkevryayrggftwlndrfkekei
gegmvfdvnslypaqmysrllpygepivfegkyvwdedyplhiqhircefelkegyipti
qikrsrfykgneylkssggeiadlwlsnvdlelmkehydlynveyisglkfkattglfkd
fidkwtyikttsegaikqlaklmlnslygkfasnpdvtgkvpylkengalgfrlgeeetk
dpvytpmgvfitawaryttitaaqacydriiycdtdsihltgteipdvikdivdpkklgy
wahestfkrakylrqktyiqdiymkevgklvegspddytdikfsvkcagmtdkikkevtf
enfkvgfsrkmkpkpvqvpggvvlvddtftik

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'Q':
    No sequence available.

  • Chain 'R':
    No sequence available.

  • Chain 'X':
    No sequence available.

  • Chain 'Y':
    No sequence available.