PDB entry 2pgc

View 2pgc on RCSB PDB site
Description: Crystal structure of a a marine metagenome protein (jcvi_pep_1096685590403) from uncultured marine organism at 2.53 A resolution
Class: unknown function
Keywords: Metagenomics target, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function
Deposited on 2007-04-09, released 2007-04-24
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-10-25, with a file datestamp of 2017-10-20.
Experiment type: XRAY
Resolution: 2.53 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Uncharacterized protein
    Species: uncultured marine organism [TaxId:360281]
    Gene: SYNTHETIC GENE: The gene product was based on JCVI_PEP_1096685590403 from the Sorcerer II Global Ocean Sampling experiment
    Database cross-references and differences (RAF-indexed):
    • PDB 2PGC (0-206)
    Domains in SCOPe 2.07: d2pgca1
  • Chain 'B':
    Compound: Uncharacterized protein
    Species: uncultured marine organism [TaxId:360281]
    Gene: SYNTHETIC GENE: The gene product was based on JCVI_PEP_1096685590403 from the Sorcerer II Global Ocean Sampling experiment
    Database cross-references and differences (RAF-indexed):
    • PDB 2PGC (Start-206)
    Domains in SCOPe 2.07: d2pgcb_
  • Chain 'C':
    Compound: Uncharacterized protein
    Species: uncultured marine organism [TaxId:360281]
    Gene: SYNTHETIC GENE: The gene product was based on JCVI_PEP_1096685590403 from the Sorcerer II Global Ocean Sampling experiment
    Database cross-references and differences (RAF-indexed):
    • PDB 2PGC (Start-206)
    Domains in SCOPe 2.07: d2pgcc_
  • Chain 'D':
    Compound: Uncharacterized protein
    Species: uncultured marine organism [TaxId:360281]
    Gene: SYNTHETIC GENE: The gene product was based on JCVI_PEP_1096685590403 from the Sorcerer II Global Ocean Sampling experiment
    Database cross-references and differences (RAF-indexed):
    • PDB 2PGC (Start-206)
    Domains in SCOPe 2.07: d2pgcd_
  • Chain 'E':
    Compound: Uncharacterized protein
    Species: uncultured marine organism [TaxId:360281]
    Gene: SYNTHETIC GENE: The gene product was based on JCVI_PEP_1096685590403 from the Sorcerer II Global Ocean Sampling experiment
    Database cross-references and differences (RAF-indexed):
    • PDB 2PGC (Start-206)
    Domains in SCOPe 2.07: d2pgce_
  • Heterogens: CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2pgcA (A:)
gmsninyviltvasvdfsyretmarlmssyskdlidnagakgtrfgsigtgdhagslifi
qfyddltgyqkaleiqskssvfkeimdsgkaniylrnistslptkfeqsyehpkyivltr
aeaamsdkdkflncindtascfkdngaltlrfgnlltgsnvgnyllgvgypsmeaiekty
dellahssykelmtfakvnmrniikil

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2pgcB (B:)
gmsninyviltvasvdfsyretmarlmssyskdlidnagakgtrfgsigtgdhagslifi
qfyddltgyqkaleiqskssvfkeimdsgkaniylrnistslptkfeqsyehpkyivltr
aeaamsdkdkflncindtascfkdngaltlrfgnlltgsnvgnyllgvgypsmeaiekty
dellahssykelmtfakvnmrniikil

    Sequence, based on observed residues (ATOM records): (download) 
    >2pgcB (B:)
sninyviltvasvdfsyretmarlmssyskdlidnagakgtrfgsigtgdhagslifiqf
yddltgyqkaleiqskssvfkeimdsgkaniylrnistslptkfeqsyehpkyivltrae
aamsdkdkflncindtascfkdngaltlrfgnlltgsnvgnyllgvgypsmeaiektyde
llahssykelmtfakvnmrniikil

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2pgcC (C:)
gmsninyviltvasvdfsyretmarlmssyskdlidnagakgtrfgsigtgdhagslifi
qfyddltgyqkaleiqskssvfkeimdsgkaniylrnistslptkfeqsyehpkyivltr
aeaamsdkdkflncindtascfkdngaltlrfgnlltgsnvgnyllgvgypsmeaiekty
dellahssykelmtfakvnmrniikil

    Sequence, based on observed residues (ATOM records): (download) 
    >2pgcC (C:)
inyviltvasvdfsyretmarlmssyskdlidnagakgtrfgsigtgdhagslifiqfyd
dltgyqkaleiqskssvfkeimdsgkaniylrnistslptkfeqsyehpkyivltraeaa
msdkdkflncindtascfkdngaltlrfgnlltgsnvgnyllgvgypsmeaiektydell
ahssykelmtfakvnmrniikil

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2pgcD (D:)
gmsninyviltvasvdfsyretmarlmssyskdlidnagakgtrfgsigtgdhagslifi
qfyddltgyqkaleiqskssvfkeimdsgkaniylrnistslptkfeqsyehpkyivltr
aeaamsdkdkflncindtascfkdngaltlrfgnlltgsnvgnyllgvgypsmeaiekty
dellahssykelmtfakvnmrniikil

    Sequence, based on observed residues (ATOM records): (download) 
    >2pgcD (D:)
sninyviltvasvdfsyretmarlmssyskdlidnagakgtrfgsigtgdhagslifiqf
yddltgyqkaleiqskssvfkeimdsgkaniylrnistslptkfeqsyehpkyivltrae
aamsdkdkflncindtascfkdngaltlrfgnlltgsnvgnyllgvgypsmeaiektyde
llahssykelmtfakvnmrniikil

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >2pgcE (E:)
gmsninyviltvasvdfsyretmarlmssyskdlidnagakgtrfgsigtgdhagslifi
qfyddltgyqkaleiqskssvfkeimdsgkaniylrnistslptkfeqsyehpkyivltr
aeaamsdkdkflncindtascfkdngaltlrfgnlltgsnvgnyllgvgypsmeaiekty
dellahssykelmtfakvnmrniikil

    Sequence, based on observed residues (ATOM records): (download) 
    >2pgcE (E:)
sninyviltvasvdfsyretmarlmssyskdlidnagakgtrfgsigtgdhagslifiqf
yddltgyqkaleiqskssvfkeimdsgkaniylrnistslptkfeqsyehpkyivltrae
aamsdkdkflncindtascfkdngaltlrfgnlltgsnvgnyllgvgypsmeaiektyde
llahssykelmtfakvnmrniikil