PDB entry 2par

View 2par on RCSB PDB site
Description: Crystal structure of the 5'-deoxynucleotidase YfbR mutant E72A complexed with Co(2+) and TMP
Class: hydrolase
Keywords: Nucleotidase, 5'-deoxynucleotidase, YfbR, HD domain phosphohydrolase, HYDROLASE
Deposited on 2007-03-27, released 2008-03-04
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.196
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 5'-deoxynucleotidase YfbR
    Species: Escherichia coli [TaxId:83333]
    Gene: yfbR, b2291, JW2288
    Database cross-references and differences (RAF-indexed):
    • Uniprot P76491
      • engineered (73)
    Domains in SCOPe 2.06: d2para_
  • Chain 'B':
    Compound: 5'-deoxynucleotidase YfbR
    Species: Escherichia coli [TaxId:83333]
    Gene: yfbR, b2291, JW2288
    Database cross-references and differences (RAF-indexed):
    • Uniprot P76491
      • engineered (73)
    Domains in SCOPe 2.06: d2parb_
  • Heterogens: CO, TMP, PEG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2parA (A:)
ghmkqshffahlsrlklinrwplmrnvrtenvsehslqvamvahalaaiknrkfggnvna
eriallamyhdasavltgdlptpvkyfnsqiaqeykaiekiaqqklvdmvpeelrdifap
lidehaysdeekslvkqadalcaylkcleelaagnnefllaktrleatlearrsqemdyf
meifvpsfhlsldeisqdspl

    Sequence, based on observed residues (ATOM records): (download) 
    >2parA (A:)
kqshffahlsrlklinrwplmrnvrtenvsehslqvamvahalaaiknrkfggnvnaeri
allamyhdasavltgdlpteykaiekiaqqklvdmvpeelrdifaplidehaysdeeksl
vkqadalcaylkcleelaagnnefllaktrleatlearrsqemdyfmeifvpsfh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2parB (B:)
ghmkqshffahlsrlklinrwplmrnvrtenvsehslqvamvahalaaiknrkfggnvna
eriallamyhdasavltgdlptpvkyfnsqiaqeykaiekiaqqklvdmvpeelrdifap
lidehaysdeekslvkqadalcaylkcleelaagnnefllaktrleatlearrsqemdyf
meifvpsfhlsldeisqdspl

    Sequence, based on observed residues (ATOM records): (download) 
    >2parB (B:)
kqshffahlsrlklinrwplmrnvrtenvsehslqvamvahalaaiknrkfggnvnaeri
allamyhdasavltgdlptpaqeykaiekiaqqklvdmvpeelrdifaplidehaysdee
kslvkqadalcaylkcleelaagnnefllaktrleatlearrsqemdyfmeifvpsfh