PDB entry 2oqm
View 2oqm on RCSB PDB site
Description: Crystal structure of a DNA damage-inducible protein from DinB family (YP_561575.1) from Shewanella denitrificans OS-217 at 1.83 A resolution
Class: structural genomics, unknown function
Keywords: YP_561575.1, hypothetical protein, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2
Deposited on
2007-01-31, released
2007-02-13
The last revision prior to the SCOP 1.75 freeze date was dated
2007-02-13, with a file datestamp of
2007-06-28.
Experiment type: XRAY
Resolution: 1.83 Å
R-factor: 0.159
AEROSPACI score: 0.69
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: hypothetical protein
Species: Shewanella denitrificans
Gene: YP_561575.1, Sden_0562
Database cross-references and differences (RAF-indexed):
- Uniprot Q12RS4 (19-End)
- leader sequence (10-18)
- modified residue (19)
- modified residue (31)
- modified residue (53)
- modified residue (184)
Domains in SCOP 1.75: d2oqma1 - Chain 'B':
Compound: hypothetical protein
Species: Shewanella denitrificans
Gene: YP_561575.1, Sden_0562
Database cross-references and differences (RAF-indexed):
- Uniprot Q12RS4 (19-191)
- leader sequence (14-18)
- modified residue (19)
- modified residue (31)
- modified residue (53)
- modified residue (184)
Domains in SCOP 1.75: d2oqmb1 - Chain 'C':
Compound: hypothetical protein
Species: Shewanella denitrificans
Gene: YP_561575.1, Sden_0562
Database cross-references and differences (RAF-indexed):
- Uniprot Q12RS4 (19-191)
- leader sequence (13-18)
- modified residue (19)
- modified residue (31)
- modified residue (53)
- modified residue (184)
Domains in SCOP 1.75: d2oqmc1 - Chain 'D':
Compound: hypothetical protein
Species: Shewanella denitrificans
Gene: YP_561575.1, Sden_0562
Database cross-references and differences (RAF-indexed):
- Uniprot Q12RS4 (19-End)
- leader sequence (12-18)
- modified residue (19)
- modified residue (31)
- modified residue (53)
- modified residue (184)
Domains in SCOP 1.75: d2oqmd1 - Heterogens: CL, EDO, FMT, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2oqmA (A:)
mgsdkihhhhhhenlyfqgmlydltvvqfskmlknlnaifdkaeafaelkkvdmdvllns
rlaadqfnlirqvqiacdtakvgvarltgqletapkhddsettlaelrqriasvltyleg
fseadfanaatiqisqprwqgkyltgyefaiehaipnlyfhittaygilrhngvevgkkd
ylgampykapil
Sequence, based on observed residues (ATOM records): (download)
>2oqmA (A:)
hhenlyfqgmlydltvvqfskmlknlnaifdkaeafaelkkvdmdvllnsrlaadqfnli
rqvqiacdtakvgvarltgqletapkhddsettlaelrqriasvltylegfseadfanaa
tiqisqprwqgkyltgyefaiehaipnlyfhittaygilrhngvevgkkdylgampykap
- Chain 'B':
Sequence, based on SEQRES records: (download)
>2oqmB (B:)
mgsdkihhhhhhenlyfqgmlydltvvqfskmlknlnaifdkaeafaelkkvdmdvllns
rlaadqfnlirqvqiacdtakvgvarltgqletapkhddsettlaelrqriasvltyleg
fseadfanaatiqisqprwqgkyltgyefaiehaipnlyfhittaygilrhngvevgkkd
ylgampykapil
Sequence, based on observed residues (ATOM records): (download)
>2oqmB (B:)
lyfqgmlydltvvqfskmlknlnaifdkaeafaelkkvdmdvllnsrlaadqfnlirqvq
iacdtakvgvarltgqletapkhddsettlaelrqriasvltylegfseadfanaatiqi
sqprwqgkyltgyefaiehaipnlyfhittaygilrhngvevgkkdylgampykapil
- Chain 'C':
Sequence, based on SEQRES records: (download)
>2oqmC (C:)
mgsdkihhhhhhenlyfqgmlydltvvqfskmlknlnaifdkaeafaelkkvdmdvllns
rlaadqfnlirqvqiacdtakvgvarltgqletapkhddsettlaelrqriasvltyleg
fseadfanaatiqisqprwqgkyltgyefaiehaipnlyfhittaygilrhngvevgkkd
ylgampykapil
Sequence, based on observed residues (ATOM records): (download)
>2oqmC (C:)
nlyfqgmlydltvvqfskmlknlnaifdkaeafaelkkvdmdvllnsrlaadqfnlirqv
qiacdtakvgvarltgqletapkhddsettlaelrqriasvltylegfseadfanaatiq
isqprwqgkyltgyefaiehaipnlyfhittaygilrhngvevgkkdylgampykapil
- Chain 'D':
Sequence, based on SEQRES records: (download)
>2oqmD (D:)
mgsdkihhhhhhenlyfqgmlydltvvqfskmlknlnaifdkaeafaelkkvdmdvllns
rlaadqfnlirqvqiacdtakvgvarltgqletapkhddsettlaelrqriasvltyleg
fseadfanaatiqisqprwqgkyltgyefaiehaipnlyfhittaygilrhngvevgkkd
ylgampykapil
Sequence, based on observed residues (ATOM records): (download)
>2oqmD (D:)
enlyfqgmlydltvvqfskmlknlnaifdkaeafaelkkvdmdvllnsrlaadqfnlirq
vqiacdtakvgvarltgqletapkhddsettlaelrqriasvltylegfseadfanaati
qisqprwqgkyltgyefaiehaipnlyfhittaygilrhngvevgkkdylgampykap