PDB entry 2jag

View 2jag on RCSB PDB site
Description: ground state and L1 intermediate of halorhodopsin
Class: membrane protein
Keywords: chromophore, chloride pump, ion transport, membrane protein, sensory transduction, membrane, chloride, receptor, ion pump, transport, photoreceptor protein, transmembrane, retinal protein, intermediate l1
Deposited on 2006-11-28, released 2006-12-14
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-12-28, with a file datestamp of 2011-12-23.
Experiment type: XRAY
Resolution: 1.93 Å
R-factor: 0.2373
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: halorhodopsin
    Species: HALOBACTERIUM SALINARIUM [TaxId:2242]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P16102
      • engineered mutation (202)
      • engineered mutation (228)
    Domains in SCOPe 2.07: d2jaga_
  • Heterogens: CL, PLM, BOG, RET, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2jagA (A:)
msitsvpgvvdagvlgaqsaaavrenallssslwvnvalagiailvfvymgrtirpgrpr
liwgatlmiplvsissylgllsgltvgmiempaghalagemvrsqwgryltwalstpmil
lalglladvdlgslftviaadigmcvtglaaamttsallfrwafyaiscaffvvvlsalv
tdwaasassagtaeifdtlrvlvvvlwlgypivwavgveglalvqsvgatswaysvldvf
akyvfafillrwvannertvavagqtlgtmssdd

    Sequence, based on observed residues (ATOM records): (download) 
    >2jagA (A:)
avrenallssslwvnvalagiailvfvymgrtirpgrprliwgatlmiplvsissylgll
sgltvgmiempaghalagemvrsqwgryltwalstpmillalglladvdlgslftviaad
igmcvtglaaamttsallfrwafyaiscaffvvvlsalvtdwaasassagtaeifdtlrv
lvvvlwlgypivwavgveglalvqsvgatswaysvldvfakyvfafillrwvannertva
va