PDB entry 2jaf
View 2jaf on RCSB PDB site
Description: ground state and L1 intermediate of halorhodopsin
Class: membrane protein
Keywords: chromophore, chloride pump, ion transport, membrane, chloride, receptor, ion pump, transport, sensory transduction, photoreceptor protein, transmembrane, retinal protein, membrane protein
Deposited on
2006-11-28, released
2006-12-14
The last revision prior to the SCOPe 2.07 freeze date was dated
2011-12-28, with a file datestamp of
2011-12-23.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.238
AEROSPACI score: 0.52
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: halorhodopsin
Species: HALOBACTERIUM SALINARIUM [TaxId:2242]
Database cross-references and differences (RAF-indexed):
- Uniprot P16102
- engineered mutation (202)
- engineered mutation (228)
Domains in SCOPe 2.07: d2jafa_ - Heterogens: CL, PLM, BOG, RET, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2jafA (A:)
msitsvpgvvdagvlgaqsaaavrenallssslwvnvalagiailvfvymgrtirpgrpr
liwgatlmiplvsissylgllsgltvgmiempaghalagemvrsqwgryltwalstpmil
lalglladvdlgslftviaadigmcvtglaaamttsallfrwafyaiscaffvvvlsalv
tdwaasassagtaeifdtlrvlvvvlwlgypivwavgveglalvqsvgatswaysvldvf
akyvfafillrwvannertvavagqtlgtmssdd
Sequence, based on observed residues (ATOM records): (download)
>2jafA (A:)
avrenallssslwvnvalagiailvfvymgrtirpgrprliwgatlmiplvsissylgll
sgltvgmiempaghalagemvrsqwgryltwalstpmillalglladvdlgslftviaad
igmcvtglaaamttsallfrwafyaiscaffvvvlsalvtdwaasassagtaeifdtlrv
lvvvlwlgypivwavgveglalvqsvgatswaysvldvfakyvfafillrwvannertva
va