PDB entry 2j9u

View 2j9u on RCSB PDB site
Description: 2 angstrom x-ray structure of the yeast escrt-I vps28 c-terminus in complex with the nzf-n domain from escrt-II
Class: protein transport
Keywords: vps, mvb, zinc, chmp, escrt, vps36, vps28, membrane, transport, nzf finger, hiv budding, zinc-finger, metal-binding, protein transport
Deposited on 2006-11-16, released 2007-01-23
The last revision prior to the SCOP 1.75 freeze date was dated 2007-01-23, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.224
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vacuolar protein sorting-associated protein 28
    Species: SACCHAROMYCES CEREVISIAE
    Database cross-references and differences (RAF-indexed):
    • PDB 2J9U
    • Uniprot Q02767 (1-End)
    Domains in SCOP 1.75: d2j9ua1
  • Chain 'B':
    Compound: vacuolar protein sorting-associated protein 36
    Species: SACCHAROMYCES CEREVISIAE
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2j9ub1
  • Chain 'C':
    Compound: vacuolar protein sorting-associated protein 28
    Species: SACCHAROMYCES CEREVISIAE
    Database cross-references and differences (RAF-indexed):
    • PDB 2J9U
    • Uniprot Q02767 (1-End)
    Domains in SCOP 1.75: d2j9uc1
  • Chain 'D':
    Compound: vacuolar protein sorting-associated protein 36
    Species: SACCHAROMYCES CEREVISIAE
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d2j9ud1
  • Heterogens: ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2j9uA (A:)
mfnakyvaeatgnfitvmdalklnynakdqlhpllaellisinrvtrddfenrsklidwi
vrinklsigdtltetqirellfdlelayksfyalld

    Sequence, based on observed residues (ATOM records): (download) 
    >2j9uA (A:)
fnakyvaeatgnfitvmdalklnynakdqlhpllaellisinrvtrddfenrsklidwiv
rinklsigdtltetqirellfdlelayksfyall

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2j9uB (B:)
mahhhhhhmasadvvstwvcpicmvsnetqgeftkdtlptpicincgvpadyeltkssin
csnaidpnanprnqfg

    Sequence, based on observed residues (ATOM records): (download) 
    >2j9uB (B:)
vstwvcpicmvsnetqgeftkdtlptpicincgvpadyeltkssinc

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2j9uC (C:)
mfnakyvaeatgnfitvmdalklnynakdqlhpllaellisinrvtrddfenrsklidwi
vrinklsigdtltetqirellfdlelayksfyalld

    Sequence, based on observed residues (ATOM records): (download) 
    >2j9uC (C:)
fnakyvaeatgnfitvmdalklnynakdqlhpllaellisinrvtrddfenrsklidwiv
rinklsigdtltetqirellfdlelayksfyall

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2j9uD (D:)
mahhhhhhmasadvvstwvcpicmvsnetqgeftkdtlptpicincgvpadyeltkssin
csnaidpnanprnqfg

    Sequence, based on observed residues (ATOM records): (download) 
    >2j9uD (D:)
vstwvcpicmvsnetqgeftkdtlptpicincgvpadyeltkssinc