PDB entry 2im5

View 2im5 on RCSB PDB site
Description: Crystal structure of Nicotinate phosphoribosyltransferase from Porphyromonas Gingivalis
Class: transferase
Keywords: Structural genomics, NYSGXRC, phosphoribosyltransferase, PSI, Protein Structure Initiative, New York SGX Research Center for Structural Genomics
Deposited on 2006-10-03, released 2006-10-24
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.22
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nicotinate phosphoribosyltransferase
    Species: Porphyromonas gingivalis [TaxId:837]
    Gene: pncB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2im5a1, d2im5a2
  • Chain 'B':
    Compound: Nicotinate phosphoribosyltransferase
    Species: Porphyromonas gingivalis [TaxId:837]
    Gene: pncB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2im5b1, d2im5b2
  • Chain 'C':
    Compound: Nicotinate phosphoribosyltransferase
    Species: Porphyromonas gingivalis [TaxId:837]
    Gene: pncB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2im5c1, d2im5c2
  • Chain 'D':
    Compound: Nicotinate phosphoribosyltransferase
    Species: Porphyromonas gingivalis [TaxId:837]
    Gene: pncB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d2im5d1, d2im5d2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2im5A (A:)
mgiirsildtdlykfttgyayaklfpraygefrfidrnrqgfteefaelvrgeiramaal
sltrdekeflqrelpylppiyidfldgfrfdpeevtvsidaqghldiraqgllyrvtlwe
tpilaviselyyrfigaepdwkqveevtrskgelmrehratfsifgmrrrfslevedrvt
dilkqyageslfgtsnvhlahkhglrvsgthphewiqfhgaiygykmanyvamedwinvy
dgdlgtvltdtyttdvfmrnfskkhamlftslrhdsgdpeifiekavrryeelrvdpkik
yiifsdsltpqraieiqklcagrikasfgigtnltndvgggveplnivmklwkckmtakd
dwhycvklsdvdgkhtgepeeillamntlgikpk

    Sequence, based on observed residues (ATOM records): (download) 
    >2im5A (A:)
iirsildtdlykfttgyayaklfpraygefrfidrnrqgfteefaelvrgeiramaalsl
trdekeflqrelpylppiyidfldgfrfdpeevtvsidaqghldiraqgllyrvtlwetp
ilaviselyyrfigaepdwkqveevtrskgelmrehratfsifgmrrrfslevedrvtdi
lkqyageslfgtsnvhlahkhglrvsgthphewiqfhgaiygykmanyvamedwinvydg
dlgtvltdtyttdvfmrnfskkhamlftslrhdsgdpeifiekavrryeelrvdpkikyi
ifsdsltpqraieiqklcagrikasfgigtnltndvgggveplnivmklwkckmtakddw
hycvklsdvdgkhtgepeeillamntlgi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2im5B (B:)
mgiirsildtdlykfttgyayaklfpraygefrfidrnrqgfteefaelvrgeiramaal
sltrdekeflqrelpylppiyidfldgfrfdpeevtvsidaqghldiraqgllyrvtlwe
tpilaviselyyrfigaepdwkqveevtrskgelmrehratfsifgmrrrfslevedrvt
dilkqyageslfgtsnvhlahkhglrvsgthphewiqfhgaiygykmanyvamedwinvy
dgdlgtvltdtyttdvfmrnfskkhamlftslrhdsgdpeifiekavrryeelrvdpkik
yiifsdsltpqraieiqklcagrikasfgigtnltndvgggveplnivmklwkckmtakd
dwhycvklsdvdgkhtgepeeillamntlgikpk

    Sequence, based on observed residues (ATOM records): (download) 
    >2im5B (B:)
iirsildtdlykfttgyayaklfpraygefrfidrnrqgfteefaelvrgeiramaalsl
trdekeflqrelpylppiyidfldgfrfdpeevtvsidaqghldiraqgllyrvtlwetp
ilaviselyyrfigaepdwkqveevtrskgelmrehratfsifgmrrrfslevedrvtdi
lkqyageslfgtsnvhlahkhglrvsgthphewiqfhgaiygykmanyvamedwinvydg
dlgtvltdtyttdvfmrnfskkhamlftslrhdsgdpeifiekavrryeelrvdpkikyi
ifsdsltpqraieiqklcagrikasfgigtnltndvgggveplnivmklwkckmtakddw
hycvklsdvdgkhtgepeeillamntlgi

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2im5C (C:)
mgiirsildtdlykfttgyayaklfpraygefrfidrnrqgfteefaelvrgeiramaal
sltrdekeflqrelpylppiyidfldgfrfdpeevtvsidaqghldiraqgllyrvtlwe
tpilaviselyyrfigaepdwkqveevtrskgelmrehratfsifgmrrrfslevedrvt
dilkqyageslfgtsnvhlahkhglrvsgthphewiqfhgaiygykmanyvamedwinvy
dgdlgtvltdtyttdvfmrnfskkhamlftslrhdsgdpeifiekavrryeelrvdpkik
yiifsdsltpqraieiqklcagrikasfgigtnltndvgggveplnivmklwkckmtakd
dwhycvklsdvdgkhtgepeeillamntlgikpk

    Sequence, based on observed residues (ATOM records): (download) 
    >2im5C (C:)
iirsildtdlykfttgyayaklfpraygefrfidrnrqgfteefaelvrgeiramaalsl
trdekeflqrelpylppiyidfldgfrfdpeevtvsidaqghldiraqgllyrvtlwetp
ilaviselyyrfigaepdwkqveevtrskgelmrehratfsifgmrrrfslevedrvtdi
lkqyageslfgtsnvhlahkhglrvsgthphewiqfhgaiygykmanyvamedwinvydg
dlgtvltdtyttdvfmrnfskkhamlftslrhdsgdpeifiekavrryeelrvdpkikyi
ifsdsltpqraieiqklcagrikasfgigtnltndvgggveplnivmklwkckmtakddw
hycvklsdvdgkhtgepeeillamntlgi

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2im5D (D:)
mgiirsildtdlykfttgyayaklfpraygefrfidrnrqgfteefaelvrgeiramaal
sltrdekeflqrelpylppiyidfldgfrfdpeevtvsidaqghldiraqgllyrvtlwe
tpilaviselyyrfigaepdwkqveevtrskgelmrehratfsifgmrrrfslevedrvt
dilkqyageslfgtsnvhlahkhglrvsgthphewiqfhgaiygykmanyvamedwinvy
dgdlgtvltdtyttdvfmrnfskkhamlftslrhdsgdpeifiekavrryeelrvdpkik
yiifsdsltpqraieiqklcagrikasfgigtnltndvgggveplnivmklwkckmtakd
dwhycvklsdvdgkhtgepeeillamntlgikpk

    Sequence, based on observed residues (ATOM records): (download) 
    >2im5D (D:)
iirsildtdlykfttgyayaklfpraygefrfidrnrqgfteefaelvrgeiramaalsl
trdekeflqrelpylppiyidfldgfrfdpeevtvsidaqghldiraqgllyrvtlwetp
ilaviselyyrfigaepdwkqveevtrskgelmrehratfsifgmrrrfslevedrvtdi
lkqyageslfgtsnvhlahkhglrvsgthphewiqfhgaiygykmanyvamedwinvydg
dlgtvltdtyttdvfmrnfskkhamlftslrhdsgdpeifiekavrryeelrvdpkikyi
ifsdsltpqraieiqklcagrikasfgigtnltndvgggveplnivmklwkckmtakddw
hycvklsdvdgkhtgepeeillamntlgi