PDB entry 2gp4

View 2gp4 on RCSB PDB site
Description: Structure of [FeS]cluster-free Apo Form of 6-Phosphogluconate Dehydratase from Shewanella oneidensis
Class: lyase
Keywords: N-terminal domain largely alpha-helical, C-terminal domain mainly beta-sheet (trefoil-like), Structural Genomics, PSI, Protein Structure Initiative, Southeast Collaboratory for Structural Genomics, SECSG, LYASE
Deposited on 2006-04-16, released 2006-05-09
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.49 Å
R-factor: 0.233
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 6-phosphogluconate dehydratase
    Species: Shewanella oneidensis [TaxId:211586]
    Gene: edd
    Database cross-references and differences (RAF-indexed):
    • GB AAN55518 (20-627)
      • expression tag (19)
      • modified residue (20)
      • modified residue (141)
      • modified residue (153)
      • modified residue (163)
      • modified residue (192)
      • modified residue (252)
      • modified residue (256)
      • modified residue (279)
      • modified residue (324)
      • modified residue (372)
      • modified residue (503)
      • modified residue (526)
      • modified residue (531)
      • modified residue (598)
    Domains in SCOPe 2.07: d2gp4a1, d2gp4a2, d2gp4a3
  • Chain 'B':
    Compound: 6-phosphogluconate dehydratase
    Species: Shewanella oneidensis [TaxId:211586]
    Gene: edd
    Database cross-references and differences (RAF-indexed):
    • GB AAN55518 (20-627)
      • expression tag (19)
      • modified residue (20)
      • modified residue (141)
      • modified residue (153)
      • modified residue (163)
      • modified residue (192)
      • modified residue (252)
      • modified residue (256)
      • modified residue (279)
      • modified residue (324)
      • modified residue (372)
      • modified residue (503)
      • modified residue (526)
      • modified residue (531)
      • modified residue (598)
    Domains in SCOPe 2.07: d2gp4b1, d2gp4b2, d2gp4b3
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2gp4A (A:)
mgsshhhhhhssglvprgshmhsvvqsvtdriiarskasreaylaalndarnhgvhrssl
scgnlahgfaacnpddknalrqltkanigiitafndmlsahqpyetypdllkkacqevgs
vaqvaggvpamcdgvtqgqpgmelsllsreviamatavglshnmfdgalllgicdkivpg
lligalsfghlpmlfvpagpmksgipnkekarirqqfaqgkvdraqlleaeaqsyhsagt
ctfygtansnqlmlevmglqlpgssfvnpddplrealnkmaakqvcrltelgtqyspige
vvneksivngivallatggstnltmhivaaaraagiivnwddfselsdavpllarvypng
hadinhfhaaggmaflikelldagllhedvntvagyglrrytqepklldgelrwvdgptv
sldtevltsvatpfqnngglkllkgnlgravikvsavqpqhrvveapavviddqnkldal
fksgaldrdcvvvvkgqgpkangmpelhkltpllgslqdkgfkvalmtdgrmsgasgkvp
aaihltpeaidggliakvqdgdlirvdaltgelsllvsdtelatrtateidlrhsrygmg
relfgvlrsnlsspetgarstsaidely

    Sequence, based on observed residues (ATOM records): (download) 
    >2gp4A (A:)
hmhsvvqsvtdriiarskasreaylaalndarnhllkqevgsvaqvagvpcdgvtqgqpg
melsllsreviamatavglshnmfdgalllgicdkivpglligalsfghlpmlfvpagpg
kvdraqlleaeaqsyhsagtctfygqlmlevmglqlpgssfvnpddplrealnkmaakqv
crltelgtqyspigevvneksivngivallatggstnltmhivaaaraagiivnwddfse
lsdavpllarvypnghadinhfhaaggmaflikelldagllhedvntvagyglrrytqep
klldgelrwvdgptvsldtevltsvatpfqnngglkllkgnlgravikvsavqpqhrvve
apavviddqnkldalfksgaldrdcvvvvkgqgpkangmpelhkltpllgslqdkgfkva
lmtdgrmsgasgkvpaaihltpeaidggliakvqdgdlirvdaltgelsllvsdtelatr
tateidlrhsrygmgrelfgvlrsnlsspetgarstsaidely

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2gp4B (B:)
mgsshhhhhhssglvprgshmhsvvqsvtdriiarskasreaylaalndarnhgvhrssl
scgnlahgfaacnpddknalrqltkanigiitafndmlsahqpyetypdllkkacqevgs
vaqvaggvpamcdgvtqgqpgmelsllsreviamatavglshnmfdgalllgicdkivpg
lligalsfghlpmlfvpagpmksgipnkekarirqqfaqgkvdraqlleaeaqsyhsagt
ctfygtansnqlmlevmglqlpgssfvnpddplrealnkmaakqvcrltelgtqyspige
vvneksivngivallatggstnltmhivaaaraagiivnwddfselsdavpllarvypng
hadinhfhaaggmaflikelldagllhedvntvagyglrrytqepklldgelrwvdgptv
sldtevltsvatpfqnngglkllkgnlgravikvsavqpqhrvveapavviddqnkldal
fksgaldrdcvvvvkgqgpkangmpelhkltpllgslqdkgfkvalmtdgrmsgasgkvp
aaihltpeaidggliakvqdgdlirvdaltgelsllvsdtelatrtateidlrhsrygmg
relfgvlrsnlsspetgarstsaidely

    Sequence, based on observed residues (ATOM records): (download) 
    >2gp4B (B:)
hmhsvvqsvtdriiarskasreaylaalndarnhkacqevgsvaqvavpcdgvtqgqpgm
elsllsreviamatavglshnmfdgalllgickivpglligalsfghlpmlfvpagpqlm
levmglqlpgssfvnpddplrealnkmaakqvcrltelgtqyspigevvneksivngiva
llatggstnltmhivaaaraagiivnwddfselsdavpllarvypnghadinhfhaaggm
aflikelldagllhedvntvagyglrrytqepklldgelrwvdgptvsldtevltsvatp
fqnngglkllkgnlgravikvsavqpqhrvveapavviddqnkldalfksgaldrdcvvv
vkgqgpkangmpelhkltpllgslqdkgfkvalmtdgrmsgasgkvpaaihltpeaidgg
liakvqdgdlirvdaltgelsllvsdtelatrtateidlrhsrygmgrelfgvlrsnlss
petgarstsaidely