PDB entry 2gfq

View 2gfq on RCSB PDB site
Description: Structure of Protein of Unknown Function PH0006 from Pyrococcus horikoshii
Class: structural genomics, unknown function
Keywords: Pyrococcus horikoshii, ph0006, Structural Genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION
Deposited on 2006-03-22, released 2006-04-25
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: 0.152
AEROSPACI score: 0.56 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: UPF0204 protein PH0006
    Species: Pyrococcus horikoshii [TaxId:70601]
    Gene: PH0006
    Database cross-references and differences (RAF-indexed):
    • Uniprot O57774 (22-295)
      • expression tag (9)
      • cloning artifact (10-21)
      • modified residue (22)
      • modified residue (26)
      • modified residue (35)
      • modified residue (38)
      • see remark 999 (55)
      • modified residue (74)
      • modified residue (122)
      • modified residue (138)
      • modified residue (145)
      • modified residue (252)
      • cloning artifact (296)
    Domains in SCOPe 2.06: d2gfqa1, d2gfqa2, d2gfqa3
  • Chain 'B':
    Compound: UPF0204 protein PH0006
    Species: Pyrococcus horikoshii [TaxId:70601]
    Gene: PH0006
    Database cross-references and differences (RAF-indexed):
    • Uniprot O57774 (22-295)
      • cloning artifact (17-21)
      • modified residue (22)
      • modified residue (26)
      • modified residue (35)
      • modified residue (38)
      • see remark 999 (55)
      • modified residue (74)
      • modified residue (122)
      • modified residue (138)
      • modified residue (145)
      • modified residue (252)
      • cloning artifact (296)
    Domains in SCOPe 2.06: d2gfqb2, d2gfqb3, d2gfqb4
  • Chain 'C':
    Compound: UPF0204 protein PH0006
    Species: Pyrococcus horikoshii [TaxId:70601]
    Gene: PH0006
    Database cross-references and differences (RAF-indexed):
    • Uniprot O57774 (22-295)
      • cloning artifact (18-21)
      • modified residue (22)
      • modified residue (26)
      • modified residue (35)
      • modified residue (38)
      • see remark 999 (55)
      • modified residue (74)
      • modified residue (122)
      • modified residue (138)
      • modified residue (145)
      • modified residue (252)
      • cloning artifact (296)
    Domains in SCOPe 2.06: d2gfqc2, d2gfqc3, d2gfqc4
  • Heterogens: SO4, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2gfqA (A:)
mgsshhhhhhssgrenlyfqghmkvimttkvdkasmnimnklienfgfketeyvfegnpv
ykrgdvlilttndemiyydyldreienqlgfkpeiiafasrhsskqklpaltthvtgnwg
kamyggkdesfavaipsamklsllkmselndlgwtvcyeathhgptelevpsffieigss
eeewindrageiiaetiiyvldnyekgrskfkvalgiggghyapkqtkralegdlafghi
lpkyaqpvsrdvmikalnrfgekveaiyvdwkgsrgetrqlakslaqelglefikdgs

    Sequence, based on observed residues (ATOM records): (download) 
    >2gfqA (A:)
hssgrenlyfqghmkvimttkvdkasmnimnklienfgfketeyvfegnpvykrgdvlil
ttndemiyydyldreienqlgfkpeiiafasrhsskqklpaltthvtgnwgkamyggkde
sfavaipsamklsllkmselndlgwtvcyeathhgptelevpsffieigsseeewindra
geiiaetiiyvldnyekgrskfkvalgiggghyapkqtkralegdlafghilpkyaqpvs
rdvmikalnrfgekveaiyvdwkgsrgetrqlakslaqelglefikdg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2gfqB (B:)
mgsshhhhhhssgrenlyfqghmkvimttkvdkasmnimnklienfgfketeyvfegnpv
ykrgdvlilttndemiyydyldreienqlgfkpeiiafasrhsskqklpaltthvtgnwg
kamyggkdesfavaipsamklsllkmselndlgwtvcyeathhgptelevpsffieigss
eeewindrageiiaetiiyvldnyekgrskfkvalgiggghyapkqtkralegdlafghi
lpkyaqpvsrdvmikalnrfgekveaiyvdwkgsrgetrqlakslaqelglefikdgs

    Sequence, based on observed residues (ATOM records): (download) 
    >2gfqB (B:)
yfqghmkvimttkvdkasmnimnklienfgfketeyvfegnpvykrgdvlilttndemiy
ydyldreienqlgfkpeiiafasrhsskqklpaltthvtgnwgkamyggkdesfavaips
amklsllkmselndlgwtvcyeathhgptelevpsffieigsseeewindrageiiaeti
iyvldnyekgrskfkvalgiggghyapkqtkralegdlafghilpkyaqpvsrdvmikal
nrfgekveaiyvdwkgsrgetrqlakslaqelglefikdg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2gfqC (C:)
mgsshhhhhhssgrenlyfqghmkvimttkvdkasmnimnklienfgfketeyvfegnpv
ykrgdvlilttndemiyydyldreienqlgfkpeiiafasrhsskqklpaltthvtgnwg
kamyggkdesfavaipsamklsllkmselndlgwtvcyeathhgptelevpsffieigss
eeewindrageiiaetiiyvldnyekgrskfkvalgiggghyapkqtkralegdlafghi
lpkyaqpvsrdvmikalnrfgekveaiyvdwkgsrgetrqlakslaqelglefikdgs

    Sequence, based on observed residues (ATOM records): (download) 
    >2gfqC (C:)
fqghmkvimttkvdkasmnimnklienfgfketeyvfegnpvykrgdvlilttndemiyy
dyldreienqlgfkpeiiafasrhsskqklpaltthvtgnwgkamyggkdesfavaipsa
mklsllkmselndlgwtvcyeathhgptelevpsffieigsseeewindrageiiaetii
yvldnyekgrsfkvalgiggghyapkqtkralegdlafghilpkyaqpvsrdvmikalnr
fgekveaiyvdwkgsrgetrqlakslaqelglefikdg