PDB entry 2d5f

View 2d5f on RCSB PDB site
Description: Crystal Structure of Recombinant Soybean Proglycinin A3B4 subunit, its Comparison with Mature Glycinin A3B4 subunit, Responsible for Hexamer Assembly
Class: plant protein
Keywords: glycinin, soybean, globulin, 11s,seed storage protein, plant protein
Deposited on 2005-11-01, released 2006-11-14
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.182
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glycinin A3B4 subunit
    Species: Glycine max [TaxId:3847]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2d5fa1, d2d5fa2
  • Chain 'B':
    Compound: glycinin A3B4 subunit
    Species: Glycine max [TaxId:3847]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d2d5fb1, d2d5fb2
  • Heterogens: CO3, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2d5fA (A:)
itsskfnecqlnnlnalepdhrvesegglietwnsqhpelqcagvtvskrtlnrnglhlp
syspypqmiivvqgkgaigfafpgcpetfekpqqqssrrgsrsqqqlqdshqkirhfneg
dvlvippgvpywtyntgdepvvaislldtsnfnnqldqnprvfylagnpdiehpetmqqq
qqqkshggrkqgqhqqqeeeggsvlsgfskhflaqsfntnedtaeklrspdderkqivtv
egglsvispkwqeqededededeeyeqtpsypprrpshgkheddededeeedqprpdhpp
qrpsrpeqqeprgrgcqtrngveenictmklheniarpsradfynpkagristlnsltlp
alrqfglsaqyvvlyrngiysphwnlnansviyvtrgkgrvrvvncqgnavfdgelrrgq
llvvpqnfvvaeqggeqgleyvvfkthhnavssyikdvfraipsevlsnsynlgqsqvrq
lkyqgnsgplvnp

    Sequence, based on observed residues (ATOM records): (download) 
    >2d5fA (A:)
necqlnnlnalepdhrvesegglietwnsqhpelqcagvtvskrtlnrnglhlpsyspyp
qmiivvqgkgaigfafpgcpetfekpqlqdshqkirhfnegdvlvippgvpywtyntgde
pvvaislldtsnfnnqldqnprvfylagnpdiehpetmqeggsvlsgfskhflaqsfntn
edtaeklrspdderkqivtvegglsvispkwgveenictmklheniarpsradfynpkag
ristlnsltlpalrqfglsaqyvvlyrngiysphwnlnansviyvtrgkgrvrvvncqgn
avfdgelrrgqllvvpqnfvvaeqggeqgleyvvfkthhnavssyikdvfraipsevlsn
synlgqsqvrqlkyqgnsgplvnp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2d5fB (B:)
itsskfnecqlnnlnalepdhrvesegglietwnsqhpelqcagvtvskrtlnrnglhlp
syspypqmiivvqgkgaigfafpgcpetfekpqqqssrrgsrsqqqlqdshqkirhfneg
dvlvippgvpywtyntgdepvvaislldtsnfnnqldqnprvfylagnpdiehpetmqqq
qqqkshggrkqgqhqqqeeeggsvlsgfskhflaqsfntnedtaeklrspdderkqivtv
egglsvispkwqeqededededeeyeqtpsypprrpshgkheddededeeedqprpdhpp
qrpsrpeqqeprgrgcqtrngveenictmklheniarpsradfynpkagristlnsltlp
alrqfglsaqyvvlyrngiysphwnlnansviyvtrgkgrvrvvncqgnavfdgelrrgq
llvvpqnfvvaeqggeqgleyvvfkthhnavssyikdvfraipsevlsnsynlgqsqvrq
lkyqgnsgplvnp

    Sequence, based on observed residues (ATOM records): (download) 
    >2d5fB (B:)
necqlnnlnalepdhrvesegglietwnsqhpelqcagvtvskrtlnrnglhlpsyspyp
qmiivvqgkgaigfafpgcpetfekpqqlqdshqkirhfnegdvlvippgvpywtyntgd
epvvaislldtsnfnnqldqnprvfylagnpdiehpetmqeggsvlsgfskhflaqsfnt
nedtaeklrspdderkqivtvegglsvispkwgveenictmklheniarpsradfynpka
gristlnsltlpalrqfglsaqyvvlyrngiysphwnlnansviyvtrgkgrvrvvncqg
navfdgelrrgqllvvpqnfvvaeqggeqgleyvvfkthhnavssyikdvfraipsevls
nsynlgqsqvrqlkyqgnsgplvnp