PDB entry 1zcc

View 1zcc on RCSB PDB site
Description: Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens str.C58
Class: hydrolase
Keywords: NYSGXRC, T2047, Glycerophosphodiester phosphodiesterase, Agrobacterium tumefaciens str. C58, Structural Genomics, PSI, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, HYDROLASE
Deposited on 2005-04-11, released 2005-05-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-03, with a file datestamp of 2021-01-29.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glycerophosphodiester phosphodiesterase
    Species: Agrobacterium tumefaciens [TaxId:176299]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1zcca1
  • Chain 'B':
    Compound: glycerophosphodiester phosphodiesterase
    Species: Agrobacterium tumefaciens [TaxId:176299]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1zccb_
  • Chain 'C':
    Compound: glycerophosphodiester phosphodiesterase
    Species: Agrobacterium tumefaciens [TaxId:176299]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1zccc_
  • Chain 'D':
    Compound: glycerophosphodiester phosphodiesterase
    Species: Agrobacterium tumefaciens [TaxId:176299]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1zccd_
  • Chain 'E':
    Compound: glycerophosphodiester phosphodiesterase
    Species: Agrobacterium tumefaciens [TaxId:176299]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1zcce_
  • Chain 'F':
    Compound: glycerophosphodiester phosphodiesterase
    Species: Agrobacterium tumefaciens [TaxId:176299]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1zccf_
  • Heterogens: ACT, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1zccA (A:)
mtkivshrganrfapentfaaadlalqqgadyieldvresadgvlyvihdetldrttngt
gpvghmlsseidtldaggwfddrfkgaivprldaylehlrgragvyielkycdpakvaal
vrhlgmvrdtfyfsfseemrqglqsiapefrrmmtldiakspslvgavhhasiieitpaq
mrrpgiieasrkagleimvyyggddmavhreiatsdvdyinldrpdlfaavrsgmaelll
asnssstc

    Sequence, based on observed residues (ATOM records): (download) 
    >1zccA (A:)
mtkivshrganrfapentfaaadlalqqgadyieldvresadgvlyvihdetldrttngt
gpvghmlsseidtldaggwfddrfkgaivprldaylehlrgragvyielkycdpakvaal
vrhlgmvrdtfyfsfseemrqglqsiapefrrmmtldiakspslvgavhhasiieitpaq
mrrpgiieasrkagleimvyyggddmavhreiatsdvdyinldrpdlfaavrsgmaelll

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1zccB (B:)
mtkivshrganrfapentfaaadlalqqgadyieldvresadgvlyvihdetldrttngt
gpvghmlsseidtldaggwfddrfkgaivprldaylehlrgragvyielkycdpakvaal
vrhlgmvrdtfyfsfseemrqglqsiapefrrmmtldiakspslvgavhhasiieitpaq
mrrpgiieasrkagleimvyyggddmavhreiatsdvdyinldrpdlfaavrsgmaelll
asnssstc

    Sequence, based on observed residues (ATOM records): (download) 
    >1zccB (B:)
mtkivshrganrfapentfaaadlalqqgadyieldvresadgvlyvihdetldrttngt
gpvghmlsseidtldaggwfrfkgaivprldaylehlrgragvyielkycdpakvaalvr
hlgmvrdtfyfsfseemrqglqsiapefrrmmtldiakspslvgavhhasiieitpaqmr
rpgiieasrkagleimvyyggddmavhreiatsdvdyinldrpdlfaa

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1zccC (C:)
mtkivshrganrfapentfaaadlalqqgadyieldvresadgvlyvihdetldrttngt
gpvghmlsseidtldaggwfddrfkgaivprldaylehlrgragvyielkycdpakvaal
vrhlgmvrdtfyfsfseemrqglqsiapefrrmmtldiakspslvgavhhasiieitpaq
mrrpgiieasrkagleimvyyggddmavhreiatsdvdyinldrpdlfaavrsgmaelll
asnssstc

    Sequence, based on observed residues (ATOM records): (download) 
    >1zccC (C:)
mtkivshrganrfapentfaaadlalqqgadyieldvresadgvlyvihdetldrttngt
gpvghmlsseidtldaggwfddrfgaivprldaylehlrgragvyielkycdpakvaalv
rhlgmvrdtfyfsfseemrqglqsiapefrrmmtldiakspslvgavhhasiieitpaqm
rrpgiieasrkagleimvyyggddmavhreiatsdvdyinldrpdlfaavrsg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1zccD (D:)
mtkivshrganrfapentfaaadlalqqgadyieldvresadgvlyvihdetldrttngt
gpvghmlsseidtldaggwfddrfkgaivprldaylehlrgragvyielkycdpakvaal
vrhlgmvrdtfyfsfseemrqglqsiapefrrmmtldiakspslvgavhhasiieitpaq
mrrpgiieasrkagleimvyyggddmavhreiatsdvdyinldrpdlfaavrsgmaelll
asnssstc

    Sequence, based on observed residues (ATOM records): (download) 
    >1zccD (D:)
mtkivshrganrfapentfaaadlalqqgadyieldvresadgvlyvihdetldrttngt
gpvghmlsseidtldaggwfddrfkgaivprldaylehlrgragvyielkycdpakvaal
vrhlgmvrdtfyfsfseemrqglqsiapefrrmmtldiakspslvgavhhasiieitpaq
mrrpgiieasrkagleimvyyggddmavhreiatsdvdyinldrpdlfaav

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1zccE (E:)
mtkivshrganrfapentfaaadlalqqgadyieldvresadgvlyvihdetldrttngt
gpvghmlsseidtldaggwfddrfkgaivprldaylehlrgragvyielkycdpakvaal
vrhlgmvrdtfyfsfseemrqglqsiapefrrmmtldiakspslvgavhhasiieitpaq
mrrpgiieasrkagleimvyyggddmavhreiatsdvdyinldrpdlfaavrsgmaelll
asnssstc

    Sequence, based on observed residues (ATOM records): (download) 
    >1zccE (E:)
mtkivshrganrfapentfaaadlalqqgadyieldvresadgvlyvihdetldrttngt
gpvghmlsseidtldaggwfddrfkgaivprldaylehlrgragvyielkycdpakvaal
vrhlgmvrdtfyfsfseemrqglqsiapefrrmmtldiakspslvgavhhasiieitpaq
mrrpgiieasrkagleimvyyggddmavhreiatsdvdyinldrpdlfaavrs

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1zccF (F:)
mtkivshrganrfapentfaaadlalqqgadyieldvresadgvlyvihdetldrttngt
gpvghmlsseidtldaggwfddrfkgaivprldaylehlrgragvyielkycdpakvaal
vrhlgmvrdtfyfsfseemrqglqsiapefrrmmtldiakspslvgavhhasiieitpaq
mrrpgiieasrkagleimvyyggddmavhreiatsdvdyinldrpdlfaavrsgmaelll
asnssstc

    Sequence, based on observed residues (ATOM records): (download) 
    >1zccF (F:)
mtkivshrganrfapentfaaadlalqqgadyieldvresadgvlyvihdetldrttngt
gpvghmlsseidtldaggwfddrfkgaivprldaylehlrgragvyielkycdpakvaal
vrhlgmvrdtfyfsfseemrqglqsiapefrrmmtldiakspslvgavhhasiieitpaq
mrrpgiieasrkagleimvyyggddmavhreiatsdvdyinldrpdlfaavrsgm